BAC Information

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BAC

Clone NameMSMg01-173B20
Chromosome15 (Build37)
Map Location 87,378,891 - 87,379,061
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173B20.T7 (MSMg01no173_b20.b1)MSMg01-173B20.TJ (MSMg01no173_b20.g1)
ACCAG368820AG368821
length741746
length of high quality
(start - end)
70 (46 - 115)171 (77 - 247)
definitionCHROMAT_FILE: MSMg01no173_b20.b1 PHD_FILE: MSMg01no173_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:43 2005CHROMAT_FILE: MSMg01no173_b20.g1 PHD_FILE: MSMg01no173_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAACCTGGCTTTGTGGCTCTTGCACTACTCCAGTGCCTGTGTCTG
TCTGCATCCCAAGGCGGTACCCCGATCTTGGAGAATAACTTTAATTTACA
AATGGACTTAATCATGAGATCACCCAAAGCTTCGCATGAAGACAGCCCCC
TTTCCATCACATGGAATGATTTTTAAATTTAATTTCTATTTCTAAGCCTC
TGGATCGTTTCTGTGTTGTGGCAGCTTCCAGAGCTGCTGATTCTGAATTC
CGCGATGAGCACATGTAACTCCAGTCTATTTTACTACAACAATGGAATAC
CTTTTCTTGGGTGNATATTCACCCCGCCCCGACTACTGAGCCCTGAAATT
CCAGATGCACATTCACGTGAATGAAAGAATAAACACAGATACCGAGATAT
GCACAAATGCATACACATACACAGGCACACACACACACACACACACACAC
ATACACAGCCTCTGAAGGTATGAGCAGCAACAGGGAACATATTCCACTGT
GGTGCTGAGAGGGGCTTGGCAAGCAACTTGCAGTCTTTTTCCATGGGTCA
GACCCAGACCTCTGTGTAAAACCTATAGGTACCCTTCAAAGGGATATCAG
AGAGACGACTACATTAGTGTACTTAACTAAGAAGCAAAAGGACCATTTTT
TCTTCCTCCGTGAAAAGTCTGATCTTTCCCCGTAAATACCT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCAGGGAGGAGTCTTGTGTAGTC
AAGCTCTTTTACTGGTTCCAACCGCCTGTGGCATCAGTGGGGTCTGGATA
GCTCATAACTAACGGGAGCAAGAATCCAGCACAGTGTGGAAGTGTAAAGT
AGGCAGTAGACTCTGATAAAAAAATGGCCCCACCGGGAGGTTGGGGGAAA
GGCCAGGGATAGTCTAGACACTCTGTCCAGGAGCAGCCCTAGCTCTGATC
TAGAGCAAGGGATAGGCAAGTCCATGTTGATTCCTGCAGGTTTCTAAACA
GAAAACCCTTTTTTTTTGCTCACCCCCCCCTCCGTGTGTACCCTGCCCCC
TTCCCGGCTCTGTGTCCGGCTAGGGAATACAGACTATAGTTACTTTATGT
GCCTGAACGAAACAATGTATTTCCCGCTAGATGTTCGTCATATAAAAACA
TAGTTCACAGGAGGCCGGGAGTGAAAGGGATCGCTACTTCCAGAAAGGCA
TCACTTTGTGAAGCCTGCGGGCTTTTCACTTTTACCTCCTTGACAACTTC
AGAAATCACATTTGTTCGGTACGAGAACCGCACATTCGGTGTCCGGTCTA
AGTATGCCTCGAATTGTATTTGTATGAGTAATGCGCGTTGTGGAGCTATC
ATGTGCCCACTCTCTGTTAGTATTCTAATGCATCGACAACGATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_b20.g1 MSMg01no173_b20.g1 CHROMAT_FILE:
MSMg01no173_b20.g1 PHD_FILE: MSMg01no173_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:43 2005
         (171 letters)



>mm_chr15_87378691_87379261
          Length = 571

 Score =  315 bits (163), Expect = 8e-91
 Identities = 169/171 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagggaggagtcttgtgtagtcaagctcttttactggttccaaccgcctgtggcatca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agcagggaggagtcttgtgtagtcaagctcttttactggttccaaccgcctgtggcatca 312

                                                                       
Query: 61  gtggggtctggatagctcataactaacgggagcaagaatccagcacagtgtggaagtgta 120
           |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 311 gtggggtctggatagctcataactaacgggagcaagaatccagcccagtatggaagtgta 252

                                                              
Query: 121 aagtaggcagtagactctgataaaaaaatggccccaccgggaggttggggg 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aagtaggcagtagactctgataaaaaaatggccccaccgggaggttggggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)