BAC Information

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BAC

Clone NameMSMg01-173N15
Chromosome15 (Build37)
Map Location 42,319,647 - 42,320,002
singlet/doubletsinglet
Overlap geneAngpt1
Upstream geneOxr1, Abra, EG432946, LOC432947, LOC100039268, LOC100039197
Downstream geneRspo2, LOC675960, Eif3s6, Ttc35
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173N15.T7 (MSMg01no173_n15.b1)MSMg01-173N15.TJ (MSMg01no173_n15.g1)
ACCAG369335AG369336
length726736
length of high quality
(start - end)
318 (46 - 363)356 (377 - 732)
definitionCHROMAT_FILE: MSMg01no173_n15.b1 PHD_FILE: MSMg01no173_n15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:36 2005CHROMAT_FILE: MSMg01no173_n15.g1 PHD_FILE: MSMg01no173_n15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGAATGTCTTTAATTTCTTTATTTTTTTTCTTGACCCAGAGATC
ATTGGATAGAGTTTTTCTATTTCCAAGAGTGTGTAGGTTTTCTAGTGTTC
TGTTGTTGTTGAATTCCAGCTTTAATCCACAGTGGTATGATAAGGTACAA
GGCATTACTTCAATTTTCTTGTATCTGTTGAGGCTTGTTTTGCGACTGAC
TATATGGTCAATTTTGAAGAAGGATCCATGAGGTGCTAAGAAGCTACATT
TTTTTGGGTGAATTATTCTATATATGTTTGTTAGGTCCATTTGATTCATA
ATGTCTGTTATTTTCATTATCCTTTCGTCCCTTTTTGTCTCAATATCCTG
TAAGTTAGTGAGAGTGGGGTATTGAAAAAAATACACTATTAGTGTGTGGG
GTTCAATGTGTGATTTGCACTTTAGCAATGTTTCTTTTACTAATGTGAGT
ACTCTTGTGTTTGCGGCATATACGTTCTTAATTGATATATCATCTTCATT
ATATTTTACCCTTCGATGTATATGTATTATTCCTTTCCTGTTTCTTTTCG
ACTTATATCGTATGATCACCTTTCTTATTACACACTCGAATGCCCTTCTC
AGCTTGCCTTCCTTTCCCCCCGTATTCGCTGAAAAACACTTTTATTTTCA
TTTTCACATCCATCCACTTTTTTTTT
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTCACACCATCTCAGAGCCATAATG
ACTGATAAGATAATTTTTTTTCTTGCTCTGCATTATTTGGACTAAAGTGC
CTTTCCCATAGCCTGATTACAATGGTATGAACATGCGATCATTATTTTCG
GTCTCTGGCCTTCTTTAAGAAGGTGCTGCAAAGCATCTGCTTCCTTCCTC
AGACTGCAGAGTCCTTTGGCTCTGTTCTCAGAATAATTCTACCATCTGAA
AGGAATTTACCTCCTGTGCAGTGTCTACTGAGGTTGCGAGGTAAATCATC
CAGTCAAGAGATGGGATAGCTCGAACTGCATGTCTCTTGGGTTCAGAATG
ACTCTAAAAACACGGCAAGAGGTGGGAGGAAATTAAAAGTTTTTGAAAGC
CACTCAGATAAATGTTGGGAAAATAGGAAATATCACTTTCATTGACTGAG
TGAAATACCTGATATTTTTGCTGACCACTTGTAATGCACAATTTAATGTT
AGGTAGAAAGAGAAAGGAAAATAAACACAGACATCAGCTACACACTACAG
TGAGAGCTTGTTCCCATTTAGCAGGGAAAATGCTTTATCTTAACAGAAAA
TTGTATGTCAGAAATTTACAATTTCTGTAAAATGAGCTACACTATCTAGC
ACTTCCTTTCACAAAACAGAGCGGCTTTAGGGGGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_n15.g1 MSMg01no173_n15.g1 CHROMAT_FILE:
MSMg01no173_n15.g1 PHD_FILE: MSMg01no173_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:36 2005
         (356 letters)



>mm_chr15_42319447_42320202
          Length = 756

 Score =  673 bits (348), Expect = 0.0
 Identities = 354/356 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcatgtctcttgggttcagaatgactctaaaaacacggcaagaggtgggaggaaattaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tgcatgtctcttgggttcagaatgactctaaaaacacggcaagaggtgggaggaaattaa 497

                                                                       
Query: 61  aagtttttgaaagccactcagataaatgttgggaaaataggaaatatcactttcattgac 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aagtttttgaaggccactcagataaatgttgggaaaataggaaatatcactttcattgac 437

                                                                       
Query: 121 tgagtgaaatacctgatatttttgctgaccacttgtaatgcacaatttaatgttaggtag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tgagtgaaatacctgatatttttgctgaccacttgtaatgcacaatttaatgttaggtag 377

                                                                       
Query: 181 aaagagaaaggaaaataaacacagacatcagctacacactacagtgagagcttgttccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aaagagaaaggaaaataaacacagacatcagctacacactacagtgagagcttgttccca 317

                                                                       
Query: 241 tttagcagggaaaatgctttatcttaacagaaaattgtatgtcagaaatttacaatttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 tttagcagggaaaatgctttatcttaacagaaaattgtatgtcagaaatttacaatttct 257

                                                                   
Query: 301 gtaaaatgagctacactatctagcacttcctttcacaaaacagagcggctttaggg 356
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 gtaaaatgaactacactatctagcacttcctttcacaaaacagagcggctttaggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 756
Length adjustment: 9
Effective length of query: 347
Effective length of database: 747
Effective search space:   259209
Effective search space used:   259209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)