BAC Information

Click to search

BAC

Clone NameMSMg01-174F09
Chromosome15 (Build37)
Map Location 84,350,258 - 84,500,364
singlet/doubletdoublet
Overlap geneLdoc1l
Upstream geneBik, Mcat, Tspo, Ttll12, Scube1, Mpped1, 4931407K02Rik, LOC667167, Sult4a1, Pnpla5, Pnpla3, Samm50, Parvb, Parvg, LOC382988, 1810041L15Rik
Downstream geneArhgap8, 3110043J09Rik, Phf21b, LOC100043084, 4930513L16Rik, Nup50, 5031439G07Rik, LOC628135, Upk3a, 3110048E14Rik, Smc1b, Ribc2, Fbln1, Atxn10, EG223745, Wnt7b, LOC100042240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174F09.T7 (MSMg01no174_f09.b1)MSMg01-174F09.TJ (MSMg01no174_f09.g1)
ACCAG369663AG369664
length792726
length of high quality
(start - end)		316 (99 - 414)347 (380 - 726)
definitionCHROMAT_FILE: MSMg01no174_f09.b1 PHD_FILE: MSMg01no174_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:11 2005CHROMAT_FILE: MSMg01no174_f09.g1 PHD_FILE: MSMg01no174_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,350,258 - 84,350,569)(84,500,018 - 84,500,364)
sequence
CTTTTTNNTTTTTTTTTTNTCTTTCTTTCCACTCCCCCGCCTATNANNAA
CATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGGCTCCTGTGCCTCAGAGCCTGAATAATAAAGCAGAAAAGC
CAGCACTAGCTCTCCTTAGGCCCAGGCCAAAGGCTGAGGGCACAGGAGCA
AAGGAGTCTGCTGGGGCTGGGGAAGGGGTGTCCTGGGTCAGCCTCTGCAT
CCCCATGACCTCAGTTCCTGTTACTGTAAAATGCATGGCAAGAGGAGATT
GGCTTCATAAGACTGCTATGAACGTGAATGTCGTATATAACCACTGCTAA
GGTGTTCAGGACACTGTGTGTGTAATACGGTGTAAATTGTCACCCCTTGG
AGCCCAGCAAGTATCTTANATTTTCACTCNATACGNATCACACTCCCGGT
ATAACAGCAGATGATGTATCCCGCCTCCCAACAATAAAAAAACTTCTATG
ACACTGCGCGCGTGTGTGTGTGCGCGTGTGCGTGCGTATGTAGAGTGAAC
CCCTGGAACCCGAAGCCCCCCCTTTCAAAGGCCCGTCGGTTTACCGCATT
TGTTTGGCCTTTTGCCTGTTTCACGCCTAAACCTTGGATAGCGATGGCCC
CCTCTGTGTTCCCCCAGACTACTGTCTTCCTATCCGGTTGGTTCTGTGTT
CGCCTTCTTGATTTTTATGTTTTGCTAGAATGGCGAATTTATCACCCATG
GTTTTTTACCCCCCCCCCGCCGTATTTCACTTTCATCCCCGC

AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTTCTCAAGCCTCTGGTCTACCGCC
TGGCAAGCCTACTTCAGGTTGCCCCAGGGCCTTTCTGGAAAATGGAGCTT
TTCCAAATGCCCACTGAGGCCCATCCGGCCTCAGGGATATGAGGACATGA
AGGACACGAAGGAGTAATGAGCATCAGAGAGGTGGAGCAACCTACCCAAG
GTCACACAGCACAGAACGCACACATATGACAGAAGCTAGACTGCCGGCCA
GGGCAGACAGTTTTATGAATGGATGAGCAAAACGACTCAGCAGCCTGGGC
GCTCTCGCATCTTGTACAGCCCACCGAAGGTACCATCTGCCGCTGTTTTT
GTTGTTGCTGATTCAAACGTAAAGTCCCACACTGTCACACTAGGCTGGAC
CTAGGAATTGGTCTTTTTCTGAGTCAGACACTTCTCAGAGACAGACTTGA
GATCAGACAAATGGCAAATCTCCTCTGACCACCAGCTCCGGAGAGACCTG
ACCCATGCTACCTCCACACAGACTCAGCGGCCCCATTCTAAAGAGGCAGA
AAACCTACCTTGCTCAGGAGCCAGAAGCTGCAGGGTGGGCGAGGGAAGGG
GTACCCTTGGCCTGTCTGCCTGTGACCTTGGCGGAGGCCTGCACAGTCCA
GAGCGGTTTGATGTTGGCTCAGCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_f09.b1 MSMg01no174_f09.b1 CHROMAT_FILE:
MSMg01no174_f09.b1 PHD_FILE: MSMg01no174_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:11 2005
         (316 letters)



>mm_chr15_84350054_84350769
          Length = 716

 Score =  580 bits (300), Expect = e-170
 Identities = 309/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggctcctgtgcctcagagcctgaataataaagcagaaaagccagcactagctc 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggctcctgtgccccagagcctgaataataaagcagaaaagccagcactagctc 264

                                                                       
Query: 65  tccttaggcccaggccaaaggctgagggcacaggagcaaaggagtctgctggggctgggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccttaggcccaggccaaaggctgagggcacaggagcaaaggagtctgctggggctgggg 324

                                                                       
Query: 125 aaggggtgtcctgggtcagcctctgcatccccatgacctcagttcctgttactgtaaaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 aaggggtgtcctgggtcagcctctgcatccccatgacctcagttcctgttactgtaaaag 384

                                                                       
Query: 185 gcatggcaagaggagattggcttcataagactgctatgaacgtgaatgtcgtatataacc 244
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 385 gcatggcaagaggagattggcttcataagactgctgtgaacgtgaatgtcgtatataacc 444

                                                                       
Query: 245 actgctaaggtgttcaggacactgtgtgtgtaatacggtgtaaattgtcaccccttggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 actgctaaggtgttcaggacactgtgtgtgtaatacggtgtaaattgtcaccccttggag 504

                       
Query: 305 cccagcaagtat 316
           ||||||||||||
Sbjct: 505 cccagcaagtat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no174_f09.g1 MSMg01no174_f09.g1 CHROMAT_FILE:
MSMg01no174_f09.g1 PHD_FILE: MSMg01no174_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:11 2005
         (347 letters)



>mm_chr15_84499818_84500564
          Length = 747

 Score =  671 bits (347), Expect = 0.0
 Identities = 347/347 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtaccatctgccgctgtttttgttgttgctgattcaaacgtaaagtcccacactgtcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 gtaccatctgccgctgtttttgttgttgctgattcaaacgtaaagtcccacactgtcaca 488

                                                                       
Query: 61  ctaggctggacctaggaattggtctttttctgagtcagacacttctcagagacagacttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctaggctggacctaggaattggtctttttctgagtcagacacttctcagagacagacttg 428

                                                                       
Query: 121 agatcagacaaatggcaaatctcctctgaccaccagctccggagagacctgacccatgct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 agatcagacaaatggcaaatctcctctgaccaccagctccggagagacctgacccatgct 368

                                                                       
Query: 181 acctccacacagactcagcggccccattctaaagaggcagaaaacctaccttgctcagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 acctccacacagactcagcggccccattctaaagaggcagaaaacctaccttgctcagga 308

                                                                       
Query: 241 gccagaagctgcagggtgggcgagggaaggggtacccttggcctgtctgcctgtgacctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gccagaagctgcagggtgggcgagggaaggggtacccttggcctgtctgcctgtgacctt 248

                                                          
Query: 301 ggcggaggcctgcacagtccagagcggtttgatgttggctcagcatt 347
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ggcggaggcctgcacagtccagagcggtttgatgttggctcagcatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |