BAC Information

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BAC

Clone NameMSMg01-174I08
Chromosome15 (Build37)
Map Location 50,333,819 - 50,334,108
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039539, LOC665160
Downstream geneTrps1, LOC100039644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174I08.T7 (MSMg01no174_i08.b1)MSMg01-174I08.TJ (MSMg01no174_i08.g1)
ACCAG369794AG369795
length696717
length of high quality
(start - end)
164 (106 - 269)290 (76 - 365)
definitionCHROMAT_FILE: MSMg01no174_i08.b1 PHD_FILE: MSMg01no174_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:24 2005CHROMAT_FILE: MSMg01no174_i08.g1 PHD_FILE: MSMg01no174_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCACCTGTGGAATACCGA
ATGGCTGATAAGCACCTGAAAAAAATGTTCAGTATCCTTAATCATCAGAG
AAACACAAATCAAAACAACCCCGAGATTCCACCTCACACCAGTCAGAATG
GCTAAGATCAAAAATTCAGGTGACAGCAGATGCAGGCTAGGATGTAGAGA
AAGAGGAACACTCCTCCATTATTGGTGGGATTGCAAGCTTGTACAACCAC
TCCGGAAATCAGTCTGGTTGTGCCTCAGAACACTGGATATAGCACTACAA
CATATTCCTGCAATACCTCTCCTGGTCATATATCCAGAAGATGTTTTTTT
CCCCCCACCGCCAAATGCTCCATTATGTTCATAGCAGCCTTATTTATACC
ATCCATAACCTGGAATGAACCTCGACGCCCCTCACCTGATTACTGTACAC
CTAAAATGTGGCATAATTACACATTGGAGCACTACTCAGCTGCCCATAAT
AATGACCTTATTATATTCCTAGGCCATTGGATGGACCTTGAGGGTATCAT
CCTTGTTTAGGTCCCCCTTTCTCTTTTGTACCCACATCATACGCCCTTTC
CGACTAATGGATACCAGCTCTTAACCCTTTGATTCTCCTTCCACCCCATA
CTACCCTGCTACACGTATCAAACTTCTTTTCCACCGTTTTACTTTG
TCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCATCTTCTCTCATGCTCTTTTC
TGAAATAAAATTCCATGAGCCAAACCCACATTCTCTAACCATACCCATCT
AAACATGGACCAGTTACACTATGGAGAACGAACAGACTGCTTTGTGTTAT
TTATTCTCCAAGCAGATGCATTGACATTTCATTCTCCTGTGAAATTTCTA
GCTTTTTGGAGGGCTAGTGACTGTGACTCCTATATTTCCTAAGCTTTTAT
TTTGAATATGTGACTCTATTAATGAAAGCTCTAAGCCAGTGAATATTTTT
ATAGAAGAAAATGACACCTAATTCCAATACTATNCTCCTTTGATATAAAA
ATTGAATACACCTTTGGGCTCCCCCCCAATAAAAAAAATAACGACTTTTT
CAGATTTCTGGAATATATTTTCAAGCTTCTCAAGTTCTAGGATTTTGTAC
AACTTCGCGACTATCCTACACCACCTCTGAAAGAGTTATACCAACGAATG
TTGTGCCTACCATTGTGATCTCTTTTCTTATCTTCACTGACAGAATTCCC
CATATGCCTTTTCTTCCATGCTATAATGAACCATCCTATACTTTAAGCCC
TGCGTTCGTTAACCGCCATTTTTTACCGTTTATACCAGTCTACATACTCA
GGGTTTATTCCAGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_i08.g1 MSMg01no174_i08.g1 CHROMAT_FILE:
MSMg01no174_i08.g1 PHD_FILE: MSMg01no174_i08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:24 2005
         (290 letters)



>mm_chr15_50333619_50334308
          Length = 690

 Score =  507 bits (262), Expect = e-148
 Identities = 283/290 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcatcttctctcatgctcttttctgaaataaaattccatgagccaaacccacattctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttcatcttctctcatgctcttttctgaaataaaattccatgagccaaacccacattctc 431

                                                                       
Query: 61  taaccatacccatctaaacatggaccagttacactatggagaacgaacagactgctttgt 120
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||
Sbjct: 430 taaccatacccatctaaacatgaaccagttacactatggagaatgaacagacttctttgt 371

                                                                       
Query: 121 gttatttattctccaagcagatgcattgacatttcattctcctgtgaaatttctagcttt 180
           ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 370 gttatttattctctaagcagatgcattgacatttcattctcctgtgagatttctagcttt 311

                                                                       
Query: 181 ttggagggctagtgactgtgactcctatatttcctaagcttttattttgaatatgtgact 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 310 ttggagggctagtgactgtgactcctatatttcctaagcttttattttgaatatatgact 251

                                                             
Query: 241 ctattaatgaaagctctaagccagtgaatatttttatagaagaaaatgac 290
           |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 250 ctattaatgaaagcactaagccagtgaatatttttatagaagaaaatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)