BAC Information

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BAC

Clone NameMSMg01-175J14
Chromosome15 (Build37)
Map Location 16,546,328 - 16,546,660
singlet/doubletsinglet
Overlap genenone
Upstream geneEG239341, LOC100040087, LOC624183, LOC100040119
Downstream geneCdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175J14.T7 (MSMg01no175_j14.b1)MSMg01-175J14.TJ (MSMg01no175_j14.g1)
ACCAG370538AG370539
length756720
length of high quality
(start - end)
334 (423 - 756)281 (93 - 373)
definitionCHROMAT_FILE: MSMg01no175_j14.b1 PHD_FILE: MSMg01no175_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:42 2005CHROMAT_FILE: MSMg01no175_j14.g1 PHD_FILE: MSMg01no175_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTTNNTTTTTTTTTNCCCCCCCCCCCCCCNNNNNCNNNNNNNNNNNN
GGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCACTGCCAAATTATGACTTCTGAGGCACCAACTTTTGGATGT
GAGCACCTACTGGATTTTGAGGACCTCACCCTCTCTTCTGTGAGGCAGCA
TCATTGGAGTGTGCACAGCTTGGCACTTGGACATGACAAAGAAAGGGAAC
AGGAAAGACAGGCACACAAACATGTACAGACAAGGGTTAGGTCGATCCTG
AGCACTCAGAAGAGGCGGCACTCATGACCTTAACCGTGCAGAACATCATC
ATGTTCAGCATAGGGGACGGTGCCAGCTAGACTCTGTAGGCACTCCACCT
AGACAATTTGTCTCAGGATGCAAACATTTAGAAGGAGGTAGCTGAAGTTG
TTGGCTTTCACTCATACTGTCAACATTTACATTCAGACCACAGAAAGGCG
TTGGCAATTTTCCACAGGTTTACTACTTTGACTCTTTGAAATGCCTCTGC
CCATTCACACAGGTTTCCATAGCTCCCCAAAGGAGTGCCCATTTCACATT
TGTTAACCAAACGCATCTAATTCTCCTCTCTTTTTCTTCTCATTTTCCTC
TAGGGAATTCTACCTAATATAGATTGTGATACCAGGGAAACCAAAATTAG
GAGAATGAAGTTATTTATTAGGATTAGAGGTATCTGGTGTAAGTTATGCA
CCATTT
NGGTGTGCCNNNCCCACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAATA
TTAATGCAAGCAATAAGCAAGAGAAGGAATATAGGCACATAAATAGGAAA
TAAAAAGGATACATTATGTATCTAAGGGAATAACATGATTTTATGCATAA
GATATCCTAAAGACTGCTTTAACTATCTCTTAAAGCTGATAAACCTTTAC
AGAAATTGGCAGTTTATAAAACTGCCACATTAAAATTAGTAGCTTACATA
TAACAATGCAAACATATTCAGAAAGATAAAGAATACAATCCCATTCATAA
ACAGCCATATATATATATATANATTANATATACACCCACATCCCACATAT
ATATATATATATATATATATATATGTATGTATATACATAAATATAGATAT
ATATATGTGTGTGTATATGTATGTATAGATATATGTATGTAACTATATAT
ATAGAGAGAGTTTTATATACAGACAATTTCTGTGAGAGATATCAGCTTTA
ATAGAGAGTTAAGCGCGCTTTAGTATATCTTATGCATAAAAACATGTTAT
TCTCTTAAATACATAATGCATTCCCTTTTATTTCCCATTTAAATCCCTTT
ATACTTTCTCTTGCATATAGCGGCATGAATATTTTAGAAATTCCGCGGGA
TCCCTCTATATGTGCACCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_j14.b1 MSMg01no175_j14.b1 CHROMAT_FILE:
MSMg01no175_j14.b1 PHD_FILE: MSMg01no175_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:42 2005
         (334 letters)



>mm_chr15_16546128_16546861
          Length = 734

 Score =  644 bits (333), Expect = 0.0
 Identities = 333/333 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatttagaaggaggtagctgaagttgttggctttcactcatactgtcaacatttacat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aacatttagaaggaggtagctgaagttgttggctttcactcatactgtcaacatttacat 474

                                                                       
Query: 61  tcagaccacagaaaggcgttggcaattttccacaggtttactactttgactctttgaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcagaccacagaaaggcgttggcaattttccacaggtttactactttgactctttgaaat 414

                                                                       
Query: 121 gcctctgcccattcacacaggtttccatagctccccaaaggagtgcccatttcacatttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gcctctgcccattcacacaggtttccatagctccccaaaggagtgcccatttcacatttg 354

                                                                       
Query: 181 ttaaccaaacgcatctaattctcctctctttttcttctcattttcctctagggaattcta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ttaaccaaacgcatctaattctcctctctttttcttctcattttcctctagggaattcta 294

                                                                       
Query: 241 cctaatatagattgtgataccagggaaaccaaaattaggagaatgaagttatttattagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cctaatatagattgtgataccagggaaaccaaaattaggagaatgaagttatttattagg 234

                                            
Query: 301 attagaggtatctggtgtaagttatgcaccatt 333
           |||||||||||||||||||||||||||||||||
Sbjct: 233 attagaggtatctggtgtaagttatgcaccatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)