BAC Information

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BAC

Clone NameMSMg01-175K10
Chromosome15 (Build37)
Map Location 31,962,813 - 31,963,122
singlet/doubletsinglet
Overlap genenone
Upstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
Downstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962, Sdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175K10.T7 (MSMg01no175_k10.b1)MSMg01-175K10.TJ (MSMg01no175_k10.g1)
ACCAG370577AG370578
length726783
length of high quality
(start - end)		314 (44 - 357)284 (71 - 354)
definitionCHROMAT_FILE: MSMg01no175_k10.b1 PHD_FILE: MSMg01no175_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:46 2005CHROMAT_FILE: MSMg01no175_k10.g1 PHD_FILE: MSMg01no175_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTCCTTGACGATCATGCAATTCCCCCTGTGTTAAGTCCTCTTCTTT
CCCTGTACCGTGTATTCCTCCTGCAGATGTCTCATAGTAATTCATTCTTA
CCTACTCGCCACCCCAGATTCTACTACTAACTGGCTTTTAGTGAGTGTTT
TAGTTTCTTCTCCTGTTGCTGTGATAAACTACTCTCTGACAAAAGCAACT
AAAGGAAAAAGGTTTATTTTAGCTCTCTATTCAAGGTATACGTCACGATG
ACAGGAAGTCAAGGCAATAGGAACCTGAAGCAATTGGTCACACTGTATCT
GAAATTTTTTAAACAACCCCCCGACTGCATGCAGGCTACTGCTCAGCCTG
CTCTTCCACCCCCACACAGGCTGGATTCCTCTGGCTAGGGAATGGCATCA
CCCACAGTGGGAGGATCAGTGAACACGTCCCAGGTAATTCTATCTCCTGT
CATGTTGAATTTAACCTCAACCATCACTGTATATGCCAGTTATTATGTGG
TAGCAAATGCCGCAAGCTGGGACATTGCTTGTGTGGCCTTTGCTTTGTAG
GCGACCTGTTTGCTTCACTATGAGTCGTCATTCTAGGTCCCTGTCAGAGA
TACTCTGTCTTCCCTACTGAGAAGGATGAATACCAAAGATACTGCAAGGT
GATGGGGAAGGATTGTCTAGTGTTTA

ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGGTTCTTATTTTTTAAT
AGGGTACTTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTCATATATAT
TAGATATTAGCCTTCTATCAGATATAGGACTGGTAAAGATCTTTTCCCAA
TCCATTGGTTTCCGTTTTGTCTTATTGACAGTGTCCTTACCCAGCCGCAA
GGATGGCCTTGTTGGACATCAGTGGGAGGAGAGGACCTTGGTCCTGTGAA
GGCTCGATGCCCCAGTGTAGCGAAATGCCAGGACAGGGAAGCAGGAGTGG
GAGGTATGGTGAGCACGCCACACGAGGGGATGNNTTTTTTTTTTTNNTTT
TTTTTTTTTCCCCCCCCCTTTTAAAAAAAAATGTGGGGGGGGGGGGGTTG
TTTCTTTTCCTTAATACACTTTTTCTTCTTTTTTTCCCCCCCCTCTTTTC
CTTTTCTTTTTCCTTATTTTCCTTCTTATTTTCTTTTTCGCTCTCTTCCC
TTTATTTTTTCTCCACTCTTTTATTTTGCTACCCTCTTTTTTTTTTCACT
TCATTCTTCTTCCCTTTCCGTCCCTCCTTTGCCGTCTTTTGTCATTATTA
TTCCTACTTCTCTTTTGAGCTCTCCTTTTCTCTTTTTTTGTATTTTTCTC
TCTCCCTTCTTCTCCTATATATTTCTTTAACACCTTATCCCTTCTCATAT
TTCGCGTTTTCTTCTCCTCATATACTGACCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_k10.b1 MSMg01no175_k10.b1 CHROMAT_FILE:
MSMg01no175_k10.b1 PHD_FILE: MSMg01no175_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:46 2005
         (314 letters)



>mm_chr15_31962771_31963484
          Length = 714

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%), Gaps = 1/310 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtccttgacgatcatgcaattccccctgtgttaagtcctcttctttccctgta 64
           ||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 352 gaattctgttcttgaggatcatgcaattccccctgcgttaagtcctcttctttccctgta 293

                                                                       
Query: 65  ccgtgtattcctcctgcagatgtctcatagtaattcattcttacctactcgccaccccag 124
           ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ccgtgtagtccttctgcagatgtctcatagtaattcattcttacctactcgccaccccag 233

                                                                       
Query: 125 attctactactaactggcttttagtgagtgttttagtttcttctcctgttgctgtgataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 attctactactaactggcttttagtgagtgttttagtttcttctcctgttgctgtgataa 173

                                                                       
Query: 185 actactctctgacaaaagcaactaaaggaaaaaggtttattttagctctctattc-aagg 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 172 actactcgctgacaaaagcaactaaaggaaaaaggtttattttagctctctattcaaagg 113

                                                                       
Query: 244 tatacgtcacgatgacaggaagtcaaggcaataggaacctgaagcaattggtcacactgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tatacgtcacgatgacaggaagtcaaggcaataggaacctgaagcaattggtcacactgt 53

                     
Query: 304 atctgaaatt 313
           ||||||||||
Sbjct: 52  atctgaaatt 43


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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