BAC Information

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BAC

Clone NameMSMg01-175K11
Chromosome15 (Build37)
Map Location 31,962,809 - 31,963,122
singlet/doubletsinglet
Overlap genenone
Upstream geneDap, EG625796, 5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231
Downstream geneTas2r119, 0610007N19Rik, Sema5a, LOC100040962, Sdc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175K11.T7 (MSMg01no175_k11.b1)MSMg01-175K11.TJ (MSMg01no175_k11.g1)
ACCAG370579AG370580
length732763
length of high quality
(start - end)		318 (43 - 360)315 (73 - 387)
definitionCHROMAT_FILE: MSMg01no175_k11.b1 PHD_FILE: MSMg01no175_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:46 2005CHROMAT_FILE: MSMg01no175_k11.g1 PHD_FILE: MSMg01no175_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGTCCTTGAGGATCATGCAATTCCCCCTGTGTTAAGTCCTCTTCTTTC
CCTGTACCGTGTAGTCCTTCTGCAGATGTCTCATAGTAATTCATTCTTAC
CTACTCGCCACCCCAGATTCTACTACTAACTGGCTTTTAGTGAGTGTTTT
AGTTTCTTCTCCTGTTGCTGTGATAAACTACTCTCTGACAAAAGCAACTA
AAGGAAAAAGGTTTATTTTAGCTCTCTATTCAAGGTATACGTCACGATGA
CAGGAAGTCAAGGCAATAGGAACCTGAAGCAATTGGTCACACTGTATCTG
AAATTAGAATATAAAAAGCCCTGAATGCATGCAGGCTACTGCTCAGCCTG
CTCTTCCACTCATATACAGGCTGGATTCCTCTGGCTAGGGAATGGCATCA
CCCACAGTGGGAGGATCAGTGAACACGTCCCAGGTAATTCTATCTCCTGT
CATGTTGAATTTAACCTCAACCATCACTGTAAATGCCAGTTATTATGTGG
TAGCAAATGCCGCAAGCTGGGACATTGCTTGTGTGGCCTTTGCTTTGTAG
GCGACCTGTTTGCTTCACTATGAGTCGTCATTCTAGGTCCCTGTCAGAGA
TACTCTGTCTTCACAACAGAGAAGGAAGAATAACAAAAGAACCTGGAAGG
NGATGGGGAAGGATTGCTAAGTGGTTAAGAGT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGTTCTGGTTCTTATTTTTTA
ATAGGGTACTTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTCATATAT
ATTAGATATTAGCCTTCTATCAGATATAGGACTGGTAAAGATCTTTTCCC
AATCCATTGGTTTCCGTTTTGTCTTATTGACAGTGTCCTTACCCAGCCGC
AAGGATGGCCTTGTTGGACATCAGTGGGAGGAGAGGACCTTGGTCCTGTG
AAGGCTCGATGCCCCAGTGTAGCGAAATGCCAGGACAGGGAAGCAGGAGT
GGGAGGGATGGTGAGCAGGGGAAGAGGGGATGGGATAGGNNTTNTTTTTT
TNTTTTTTCCCCCCCTTCGCNTTTTTTTTCCCCTCCTTCCTTTTTTCCTC
CTCTCCCCTTTTTTTTTCTTTCCTTCTTCTGCTTTTGTTTTTTCTGTCCC
TTCTTTCTCTTTTTTTCCTCTCTCGCCTTTCCTCTTTTTTCTTTCCCTCC
TTCTCTTTTCCTCCGTCCTGCTGTTTCCGTTTCTTCCTCGCTTTTTTTCT
TCTTTTCTTTTTTTCTGTTCCCCCCTTATCCTCTTTCCACCCCCTCCCCC
ATTTCTTACCCTTAACTTTTTTTTTTTTATAGACACATTATTAATCGTTT
TACACTTGTTATTTTTTCCAACCACCATCTCTCCTTTTCTACTATTCTTG
CCACGTTCTGTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_k11.b1 MSMg01no175_k11.b1 CHROMAT_FILE:
MSMg01no175_k11.b1 PHD_FILE: MSMg01no175_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:46 2005
         (318 letters)



>mm_chr15_31962771_31963488
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%), Gaps = 1/314 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtccttgaggatcatgcaattccccctgtgttaagtcctcttctttccctgta 64
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 352 gaattctgttcttgaggatcatgcaattccccctgcgttaagtcctcttctttccctgta 293

                                                                       
Query: 65  ccgtgtagtccttctgcagatgtctcatagtaattcattcttacctactcgccaccccag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 ccgtgtagtccttctgcagatgtctcatagtaattcattcttacctactcgccaccccag 233

                                                                       
Query: 125 attctactactaactggcttttagtgagtgttttagtttcttctcctgttgctgtgataa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 attctactactaactggcttttagtgagtgttttagtttcttctcctgttgctgtgataa 173

                                                                       
Query: 185 actactctctgacaaaagcaactaaaggaaaaaggtttattttagctctctattc-aagg 243
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 172 actactcgctgacaaaagcaactaaaggaaaaaggtttattttagctctctattcaaagg 113

                                                                       
Query: 244 tatacgtcacgatgacaggaagtcaaggcaataggaacctgaagcaattggtcacactgt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 tatacgtcacgatgacaggaagtcaaggcaataggaacctgaagcaattggtcacactgt 53

                         
Query: 304 atctgaaattagaa 317
           ||||||||||||||
Sbjct: 52  atctgaaattagaa 39


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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