BAC Information

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BAC

Clone NameMSMg01-175L15
Chromosome15 (Build37)
Map Location 96,542,690 - 96,542,919
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2
Downstream geneLOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354, LOC100042774, D15Ertd682e, Pp11r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175L15.T7 (MSMg01no175_l15.b1)MSMg01-175L15.TJ (MSMg01no175_l15.g1)
ACCAG370632AG370633
length718779
length of high quality
(start - end)
242 (128 - 369)---
definitionCHROMAT_FILE: MSMg01no175_l15.b1 PHD_FILE: MSMg01no175_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:52 2005CHROMAT_FILE: MSMg01no175_l15.g1 PHD_FILE: MSMg01no175_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCGGA
ATTCACTTCTATCCAAGACATGGGGTGAATGCACTTGGGTTTGTAGTTCC
TGCTTAATTTTCATTTACAACACATGACGTTCCCCCACCCCAGCTTCCTC
CTTCTTCACATTGCTTTATGACTATTCATCTGTTCCTCCACCCATCCATC
TACACACTCATCTAATCATCCATCCATCCATCCATCCATCCATCCATCCA
TCCATCATGCATCCATCCCCCCACCGTTACTCCTATAGTTGATACTGGGG
ATATATATTGAGTTTGTATATACTTCATTGTCCTGTCTTGTGTTTCGCAA
ATGATATTTCTGTTTTTATATGGCAGCTTTTAGAAATACTTCTGTGTATG
TGTGTGTGCCCCCACCCCCTATGTGTAATATGTAAACAGGTCAGAAGAGG
GCTGAGTACAATTGTGAGCCACCATGTGGGTGCTGGGAAACAAGCCCAGA
GCTTCTTAGAGCGTAGCGCATGGCTTTAACTGCTGAACACTCTCTTCAGC
TCTACATATGATTGTTTTTTGTTAAATAAGAAAAACAATCTTGTGGATGC
TCATTGTCATCTATACGATGGAACACAGGGTCCCCAATGGAGGAGCTAGA
GAAAGTACCCAAGGAGCTGAAGGGATCTGCAACCCTATAGGTGGAACAAC
AATATGAACTAACCAGTN
ATGCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGCCCTAGAGAGAAAAAAAATCTTGCTGGG
AACTACATGCTGTATATCCTTATGGATAACTTGGGGGATATGAGAGTTGC
GGCCTTGTTCATTGAGAGACCAGGGAGTCACCAATCTCAGGTTGCAGGTG
AGGGCTCCTGAAAACAACGATCGGTGTAACCGACACCTCACGGCCTTACT
GGAAAGAAACTCTCTCTCTATTCACAGCGTTAGCCAGCAGGTTGTTTCGG
AGAGAATCCCACTGACTTTGTCTTGTTGGCAGTCCCGCCAGAAGACGCTA
AAACTTCACTGATACTCCCCCCCCCCACCCCTCAGTTTTCCGCTATGTCA
CTTGCCAAACCCCGCTACCCAAAAAAAAAAAAAACGTCTCTATTCCAGCC
CATAGAGATCGAATTCGACACATTTCCCTAAATTACTGAAGTGAACCAAT
CCCCGACTCGGACCAACGTCTCCCTTTATCTTCACGACCGAAAACGTTCC
CAGCCCGGTTCCGTTGCTTTACAGCGGCCCAAAAATAGATTACCCCCCCT
CCGATTCTTACCCACCCCGCCCCGCCCTTCCCTCCTGTCTTGGCTTATAG
GCACAAGCTAACCCCCGTCGCCTCCCCCCCTTTTTTCCCCATAAACTTCT
CCGTTCCCCAGCGGCTTACAACCCTCGTATTTTGCCTATCCTAATACCAT
CCTTACGCCTTCGTGCTAAAACCTACTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_l15.b1 MSMg01no175_l15.b1 CHROMAT_FILE:
MSMg01no175_l15.b1 PHD_FILE: MSMg01no175_l15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:52 2005
         (242 letters)



>mm_chr15_96542478_96543119
          Length = 642

 Score =  398 bits (206), Expect = e-115
 Identities = 228/242 (94%), Gaps = 12/242 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgttcccccaccccagcttcctccttcttcacattgctttatgactattcatctgttcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cgttcccccaccccagcttcctccttcttcacattgctttatgactattcatctgttcct 272

                                                                       
Query: 61  ccacccatccatctacacactcatctaatcatccatccatccatccatccatccatccat 120
           |||||||||||||||| ||||||||||||||||||||||          |  ||||||||
Sbjct: 273 ccacccatccatctacccactcatctaatcatccatcca----------c--ccatccat 320

                                                                       
Query: 121 ccatccatcatgcatccatccccccaccgttactcctatagttgatactggggatatata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatccatcatgcatccatccccccaccgttactcctatagttgatactggggatatata 380

                                                                       
Query: 181 ttgagtttgtatatacttcattgtcctgtcttgtgtttcgcaaatgatatttctgttttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 ttgagtttgtatatacttcattgtcctgtcttgtgtttcgcaaatgatagttctgttttt 440

             
Query: 241 at 242
           ||
Sbjct: 441 at 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)