BAC Information

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BAC

Clone NameMSMg01-175M05
Chromosome15 (Build37)
Map Location 89,314,559 - 89,314,871
singlet/doubletsinglet
Overlap geneArsa
Upstream geneZdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1, Panx2, Trabd, 1300018J18Rik, Hdac10, Mapk12, Mapk11, Plxnb2, LOC100043185, 1700027J05Rik, Saps2, Sbf1, Adm2, Miox, Tmem112b, Ncaph2, Ecgf1, 2010001J22Rik, Klhdc7b, 1700007E06Rik, Cpt1b, Chkb, C730034F03Rik, Mapk8ip2
Downstream geneShank3, Acr, Rabl2a, LOC676575, Syt10, Alg10b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175M05.T7 (MSMg01no175_m05.b1)MSMg01-175M05.TJ (MSMg01no175_m05.g1)
ACCAG370659AG370660
length717746
length of high quality
(start - end)
313 (45 - 357)339 (70 - 408)
definitionCHROMAT_FILE: MSMg01no175_m05.b1 PHD_FILE: MSMg01no175_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:55 2005CHROMAT_FILE: MSMg01no175_m05.g1 PHD_FILE: MSMg01no175_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGTCTC
TGCCTCCCACGTGCTGGGATTAAAAGCGTGCGCCACCACGGCCGGGCCTG
TTCATCTATTGATTGATTGATTGTCTCTCTGAGGAAAAATCACCTAGCAG
TTATATGTACTGAATATAGTTGATAAATTAAAAAAAAGGTCAATTTCAAC
AATATAATCTACAGCCCTCCTATTGTAAAACACCTGAAAATGGCAATTAG
AATTTTAATAATTATTCTTTTATGTGTGTATTCCAGCTTAAAAGACACAA
AGCGAAGATTATTTCCAAATCCCCACACCACACTCGTATGAAATCTGGAA
CATTCACCACACCAGGACCTTAAAATCTGGAGTTTTAAGGATGCATAGGA
GCCAAGATGTCAGAATGTGACCAGAAGTTGGAAAAAAAGATGCCCACATC
AAATATGTACTGAAAAGATGAGGAAAAAGAAGTTGATTTCCAGGAAAGAA
AAACGAATAATCTGGGGAGCTGAAGAGATAACTTATTGGTTAAGAGCGTG
TGTTGCTTTTCTGGAGAACTCAGGTTTAATCTCTAGCACCTACATGGTAG
CTCACAAGCATCTATAACTACAATCCGAGAATATCTAATTCCCTCTCCTA
GCCTCTGCAGGCAATGA
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACATCTTCATCTAAAGGCTTCTAGTGGAAG
ACTCACTTCCAGGCAGCTAGGACAAAGGTATTAAAGCCCATACCTACAAG
GCCACACCTACTCCAACAAGGCCACACCTACTCCAACATGGCCACACCTT
GAAACAGTGCCACTCCCTGGGCCAAGCATATACAAACCATCACAGACCTG
TTTAGAAATACTTCTTTGGGGTAAATCCAATCTGTGTTGTCAGGACAACA
GCAGTTCACACAAATCATCAGAAGTATCTTGATTCACTCATAAACATCAT
TCATCAATCATCAATGGCCATTCAATCCAGAAGAAACTGCAAGACTCTGA
CAATCAGCCCACCCCCGAGGAAGTGGCAAGAAGCCACTAGGACACCACCA
GAAGTTCTTTGGTGCTTTTCTCTCTACAAAGCCATGACAAACGATGATCA
GGCAAGGTAAACCAATGCCACAGCATCAGTAAAGCCCAAGGAAGACCAGT
AATGAGTGGAAAGGTGAACCAATGCCACACAGCATCATGCACTGTCTGTT
GGGTTATATTTATGCCCTTTCCTAACATCACATGTTCTCTCAAGCATCCA
TTCTAGCAAAACATCACATGCCCCTTTCTCCAGGTAGCTTTCCAGAAAAA
CACCACATTGTCTGTTCTAAACCAAAACATCCTCCCACGTGTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_m05.b1 MSMg01no175_m05.b1 CHROMAT_FILE:
MSMg01no175_m05.b1 PHD_FILE: MSMg01no175_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:55 2005
         (313 letters)



>mm_chr15_89314356_89315071
          Length = 716

 Score =  578 bits (299), Expect = e-169
 Identities = 309/313 (98%), Gaps = 3/313 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactctgtagaccaggctggcctcgaactcagaaatctgcctgtctctgcctcc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactctgtagaccaggctggcctcgaactcagaaatctgcctgtctctgcctcc 263

                                                                       
Query: 64  cacgtgctgggattaaaagcgtgcgccaccacggccgggcctgttcatctattgattgat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacgtgctgggattaaaagcgtgcgccaccacggccgggcctgttcatctattgattgat 323

                                                                       
Query: 124 tgattgtctctctgaggaaaaa--tcacctagcagttatatgtactgaatatagttgata 181
           ||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgattgtctctctgaggaaaaaaatcacctagcagttatatgtactgaatatagttgata 383

                                                                       
Query: 182 aattaaaaaaaa-ggtcaatttcaacaatataatctacagccctcctattgtaaaacacc 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aattaaaaaaaaaggtcaatttcaacaatataatctacagccctcctattgtaaaacacc 443

                                                                       
Query: 241 tgaaaatggcaattagaattttaataattattcttttatgtgtgtattccagcttaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaaaatggcaattagaattttaataattattcttttatgtgtgtattccagcttaaaag 503

                        
Query: 301 acacaaagcgaag 313
           |||| ||||||||
Sbjct: 504 acaccaagcgaag 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 716
Length adjustment: 9
Effective length of query: 304
Effective length of database: 707
Effective search space:   214928
Effective search space used:   214928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)