BAC Information

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BAC

Clone NameMSMg01-176C11
Chromosome15 (Build37)
Map Location 33,556,666 - 33,557,288
singlet/doubletsinglet
Overlap genenone
Upstream geneSema5a, LOC100040962, Sdc2, Pgcp, 1700084J12Rik
Downstream geneTspyl5, LOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176C11.T7 (MSMg01no176_c11.b1)MSMg01-176C11.TJ (MSMg01no176_c11.g1)
ACCAG370932AG370933
length1,2231,170
length of high quality
(start - end)
558 (133 - 690)625 (135 - 759)
definitionCHROMAT_FILE: MSMg01no176_c11.b1 PHD_FILE: MSMg01no176_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:33 2005CHROMAT_FILE: MSMg01no176_c11.g1 PHD_FILE: MSMg01no176_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:47:34 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CATTCCNTTNNNNAACAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCATTTCTAGACATATCACCAATAAAAGGCTTAGCTAAGNAT
TCAAACAACTTTGAAACTGTTTAATAAGCACTAGAATTGAGGCAGTAATA
AAAATATATTTGGAAAAATAAGAATCTAGCAGGCCCAGGTGGATTCAGAG
CTTGAAAGGTATCAGACCTTTCAAGAATAAGTAATATGGATTGTTTATCA
AACTCCTTCATAAACTAGAATTGGATATAATGCTACCAAGATCTTTATGA
AACCAGTGTTAGTCTGTTACCTAAACCAGATAAAGGCACAATAAAGGGAA
CAAAATTGTAGGCTATTGTGATGGTTTGTATATTCTTGGACCAGTGAGTG
GCAACATTTGTTTATGTGGCCTTGTTGGAATAGGTATGACCTGGTTGGAG
CAGGTGTGTCACTGTGGGTGTGAGCTTAAGACTCTCACTCCAGTTGATTA
GAAGTCAGTCTTCCACTAGTAGCCTTTGGTTGAAGACATAGAACTCTCAG
CTCTGCCTGCACCATGACAGCCTGGACGCTGCCATGCTCCCACCTTGATG
ATAATGGACTGAACCTCTGAACCTGTAAGCTAGCCCCAATTAAATGTTTG
TTTGTTTGTTTTTTTTTTTTTTTGCTTTTTTTATAAGGCCTGCCTCGGTC
ATGGTGTCTGTTCACAGCAGTAAAACCCTAACTAAGACAGCTATTAATGC
ACATAGATATAAAAATTCTCAATAATAGCTTGAAAACTGAATTCCAAATA
CATGAAAAATTATCCCCCATGATTAACTTGACTTTATTACTGGGATGCCA
TACCCAGTCAACATATGTAACTCAATAAATAGTACGTATTGTAAGTGAAC
TTATAGACAAAAATTACATGTCTTTCTAAATAGATCCCGAAAAGACTATT
GACCAAATTTCACCATCCCTTCCTGATAAAAGTCCTGAAATAAGTATGGA
ATACCAAGAACCTTTTCTCCAAAATAATAAAGGGGAATTTATTTTTAAAA
CCAGCCTCCCCGGATTTATATTATTTTTTTTCTCTTAAGGGATTTTCCCC
CTCTATTCGGGAGGTCCCCTCCTTATTCCTATTTTAAAAAGACAAACTTT
TTTAATTTACCTCTAGAATATTCCCACATGCTTCTGTGGAAGACTGGTTA
TAAAAAGAGAATTTCTTTCAAGG
CCCAATCTTNTTNTTTAGATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCTAAAACCGCCTTCCTTGGN
GATGAACAGCAGTATGGAACCTTAAACTGACCTAACCCTTTCCTCTCCAA
CTTGCTTCTTGGCCGTGATGTTGGTGCAGGAATAGAAACCCTGACTAAGA
CAGTAGGTTTTGTTGATGGATCATTTAAATATCTTAACTAATGCCATGTC
TTCCATTCTGGTTGACCTGTAACTTCTCAGACTTCTCCTACTCTGATTCT
GGCCTTGCCCATGTGTCTTGAATCAGCCAGTGGGAAAGTAGTTAACTACA
TGTAAGTAGAAGCTTGAAGTACCTCTGAGTATTTCCACTGCCACTCACAT
GTAGTGTTGATTTCTAGCTGACACTCTTCCATACTTTTAAATGTACTGAC
AGGCACCTATCTGTATCCCTACTTAACAGGCTTCTACTGCCAGGACATGA
CATTGTGTCATCTCATAGGGAAGTTAGGGTTCATAAAGGGTTGCTACATC
CCAGTCCCACCCCTTTCCCTGACTTCTGCCTGGGAATCCTAGAGCCTGGC
TGCAAAATCATGCTATGTACTACTCTCGACCTCAGTATATTAGTTTGCTT
CTATGCTGCTGCAATGAAAGACTGACCTCAGTAACTTAGGGAAGAGTTTA
TTTGGCTTAAAGGTTCCAGGCCATCATCCGGAGAGGGCACCTTTGGAGCT
CAATTCAGGAACCCACAAGCATGAATGGAAGCAGATCTGGTGGAGGAATC
TTGCATAATAATGTATTTGATAGGAAAAGTATAAACTCCCGGTGTGAAGC
TTTACAGTTTACGAATGACTTCCTATCTGTACAGAAATTTTGCTGATCTA
TATAGAACTTTGAACTCCAGGAAAATTTTGGCGTACGGAAGTGCTTTTTA
TTTTTCAAGTTCCTTTATAAAATAAATTTTTTATCTTCAGAAAACTCCTA
CCTTTTAACACTATATCAATTATCTTCCCCTAAAATTATTCTTCCCTCGG
GCCCCTCACCAAAGGTGCTAAACTGGGCACACAAAACCCTCCCCTCCAAT
TTATACCAACTATTATAAACCCCTCTCAATATTGTGGGCCTTTTTTGAAC
TCCTCCTCACTTGCGCCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_c11.g1 MSMg01no176_c11.g1 CHROMAT_FILE:
MSMg01no176_c11.g1 PHD_FILE: MSMg01no176_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:47:34 2005
         (625 letters)



>mm_chr15_33556466_33557488
          Length = 1023

 Score = 1166 bits (603), Expect = 0.0
 Identities = 619/625 (99%), Gaps = 2/625 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctttcctctccaacttgcttcttggccgtgatgttggtgcaggaatagaaaccctga 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 accctttcctctccaacttgcttcttggtcgtgatgttggtgcaggaatagaaaccctga 260

                                                                       
Query: 61  ctaagacagtaggttttgttgatggatcatttaaatatcttaactaatgccatgtcttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagacagtaggttttgttgatggatcatttaaatatcttaactaatgccatgtcttcc 320

                                                                       
Query: 121 attctggttgacctgtaacttctcagacttctcctactctgattctggccttgcccatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attctggttgacctgtaacttctcagacttctcctactctgattctggccttgcccatgt 380

                                                                       
Query: 181 gtcttgaatcagccagtgggaaagtagttaactacatgtaagtagaagcttgaagtacct 240
           ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 381 gtcttgaatcagccagtgggaaagtagttaacta--tgtaagtagaagcttgaagtacct 438

                                                                       
Query: 241 ctgagtatttccactgccactcacatgtagtgttgatttctagctgacactcttccatac 300
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 439 ctgagtatttccactgccactcacatgtagtgttgaagtctagctgacactcttccatac 498

                                                                       
Query: 301 ttttaaatgtactgacaggcacctatctgtatccctacttaacaggcttctactgccagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttttaaatgtactgacaggcacctatctgtatccctacttaacaggcttctactgccagg 558

                                                                       
Query: 361 acatgacattgtgtcatctcatagggaagttagggttcataaagggttgctacatcccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 acatgacattgtgtcatctcatagggaagttagggttcataaagggttgctacatcccag 618

                                                                       
Query: 421 tcccacccctttccctgacttctgcctgggaatcctagagcctggctgcaaaatcatgct 480
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tcccacctctttccctgacttctgcctgggaatcctagagcctggctgcaaaatcatgct 678

                                                                       
Query: 481 atgtactactctcgacctcagtatattagtttgcttctatgctgctgcaatgaaagactg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 atgtactactctcgacctcagtatattagtttgcttctatgctgctgcaatgaaagactg 738

                                                                       
Query: 541 acctcagtaacttagggaagagtttatttggcttaaaggttccaggccatcatccggaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 acctcagtaacttagggaagagtttatttggcttaaaggttccaggccatcatccggaga 798

                                    
Query: 601 gggcacctttggagctcaattcagg 625
           |||||||||||||||||||||||||
Sbjct: 799 gggcacctttggagctcaattcagg 823


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1023
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1013
Effective search space:   622995
Effective search space used:   622995
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)