BAC Information

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BAC

Clone NameMSMg01-176H15
Chromosome15 (Build37)
Map Location 10,177,668 - 10,178,356
singlet/doubletsinglet
Overlap genePrlr
Upstream geneLOC666503, Ugt3a1, LOC100039661, Ugt3a2, LOC383094, Capsl, Il7r, C230086A09Rik
Downstream geneAgxt2, 4930461P20Rik, Bxdc2, Rad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-176H15.T7 (MSMg01no176_h15.b1)MSMg01-176H15.TJ (MSMg01no176_h15.g1)
ACCAG371163AG371164
length1,2771,265
length of high quality
(start - end)
689 (87 - 775)381 (69 - 449)
definitionCHROMAT_FILE: MSMg01no176_h15.b1 PHD_FILE: MSMg01no176_h15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:16 2005CHROMAT_FILE: MSMg01no176_h15.g1 PHD_FILE: MSMg01no176_h15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:48:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCCTNNNNNAACACTGGGCGNATAGACTCCTAAGGGAGXXXXXXXXXX
XXXXXXXXTAGCCTTCTTTGGCCCTTTTAATGGACATCTGTGACTCAATT
TACATGTGGAAGTTCTATTACACACATGCTTCATTTAGTTAAATACGTAT
ACAGGTGGAAGTTACTATATCTCTTGCCCTTTGCCTTGCAAATTCCACTC
AATCAATGCCAAGAACAGAACTAAGAAGACATGTTCACCTCTCTTTCCCT
TCACATTCAATGTGACTCAGTTGTGACCCTGAAAGGACAGTACATTCCAT
CTGTCTCACACCTGCCTGGTGTCTGGGATCCATCTCTGGGATTGACAGCA
TCTGTGTCCTCTGATTTCTACTCTTTAGAAAAAAAAAATCAATGCCCACA
TCATATTGTTAACCTTTCAAAAAGCTCAAGAAGAGTGACAAGAAAGCAAA
ATTGCTCCCAGGGAGCTTCAATTGCTGGTGAAAGGCTGATCCAATAAGAC
CTCCTGGCAGAAAGCACAGACATTCCAGGTCATTCCAAATGCCTGTGACA
ATATGTCAGTACACTGTCTGACTGCGTGTGTAGTAGTGACTCTTAATATG
GTTATTTACTAACCATGTGTTGCCATGGAAACAAGGTAAAGCAACATGCT
CTTGAGACACAGAGACTTAGCATGTTAGAGAGGTGGTGCCTAAATCCCAT
TCTACAGCCAGTACGCTGTTCACACAGGCAGACCACACCCCTCTAGGCCT
CCTATTCTTCCTTGGGACATGAGAACCCTGTAGCCACTCATCCTCAAGAC
ATGGTATCCGCTCTCCTCTTGTATTTGAGAAGCATATCATTCTGAGGCTA
AAGGGCGGAGCCAGCCATCTTCTTGACCGGTTGGGCTTACAATTATGTAC
TTGACAAATCTCCAACATGTTTGAACCAGAGAGGAATACGTAAAATTCCT
TCTATGATGCTCTGGTACTCCTGCTTATTGAATTAAATAAACATACTTAC
TTACTTTAATTCCTAACGTTTTGCAGATCAAAAATTTAAAATAATGTTCT
AAAATCCCAATGCTTTCTTTGATTCCTGTTAAATTTGAAATCTTAAGATA
TTGTGTTAACCCTAATCCTTATTGGTTCCCTGAATTTCTTTAAACCTATT
TAAATTTTATCCCTCTTTCATAAAACCGTACTTTCTAAATAAANCCTACT
TCTCTTTAACCCTCTATATATACAATCTTTTTATTATAATACTAATGTTC
GCTGAATTATTCTCTCCCTCCTTATTA
NNTTATGACGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATAGCCACTGAGGCTCTCTGTAGAGGATCTGC
ACAAGATCAAATCAGTCAAACCTTTTAACATGGAGTGAGAGCGGCTCCTG
AGGCCCCACATCCAGCTGAAGAGCTACTGGTGGTTGGTAGAGACTGGAGG
AGAAGAAAAATCACTTTTCTTTGAGGGTGGGGGAGGTGATTACTTGCAGG
GTGCCCATGACTCACTGGAAGACACCCCCATATGAGTAGCACTAATTGGA
TACAGTGTATTATTAAACATAAACAAACAAACAAAAAACAAAACGAACAA
ATAAAAATAAATCTCCCTCAATTGGGAGGGAGATGTGTATAATTGTAAGG
TTTCGGCCTGCTTGCTCCTGTTGTGCGTTATTACTTAAATTAGGAAGACT
TGTTTTTTTCTCCCCCCCCATTACCTGCTTCCCCCCTCATAAAAAAAAGG
GGGGTAATAAACCTCATTTTCCTTATCCCATCTATTTTCCTAGGAGTTTA
TCTAGTGTCTGTGCTAAACCATAAAAGCCATTGCAGCTGTAGTCAATTGT
CCTGATGCATAGTGCTGATTGTGCAGAGACATCTCTTAGATCAACAGCTT
GGCTTTATGAATACTTTCCCCAAACATTACGTAAGTGACATTAACCTACA
GCCACTTAATACTTCCTATTGTAATTGCTTATTATCATTATTATTATCAT
TATTATTACTATTACTATTATTATCCTTTCCTTCATGGCTTTCGTCCCTC
CCCTCTCCTCTCCTTCCTCCTCTCTTCTCTCCTCTTCTCCTCCTCTCTTT
TTCTCCCTACCTTTCTCCTCTCTTTTTCTTTTTCTTCCTCTTTTCTTTTC
TTTCTTCTTCTTTCTCTTCTTCTCCCTTTTCCCTCTCCCTCCTCTCTTTT
CTCTTTTCTTTTCCTTTTCTTCTCTTTTTTCTTTTCTTTCTTCTCTCTCT
TCTTTCTCTTCCTCTTCTTTTTTTCTTTTTCTTTCTCTCTTATTTTTCTC
CTCTCCTTCCTCCCCTTCCTCTCCTATTCTCCTTTCTATCTCTTTCATCC
ATCCTCCTCCTTCTTCCCTCCTCTCCCCTCTTTTCTTTCTTTCCTTTATT
GCCCACTCTCATTTCATATTTTTCTCTCCTTCTCCACTCTTCCTTCATCT
CCTCTCTTCTTTTCTCCTTCCCCCTCTTCCTATTCCCTTTCCTCTTTTCT
CTCCTCCCTCACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no176_h15.b1 MSMg01no176_h15.b1 CHROMAT_FILE:
MSMg01no176_h15.b1 PHD_FILE: MSMg01no176_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:16 2005
         (689 letters)



>mm_chr15_10177468_10178556
          Length = 1089

 Score = 1270 bits (657), Expect = 0.0
 Identities = 681/689 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgtgactcaatttacatgtggaagttctattacacacatgcttcatttagttaaatac 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tctgtgactcaatttacatgtggaagttctagtacacacatgcttcatttagttaaatac 260

                                                                       
Query: 61  gtatacaggtggaagttactatatctcttgccctttgccttgcaaattccactcaatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 gtatacaggtggaagttactatatctcttgccctttgccttgcaaattccacttaatcaa 320

                                                                       
Query: 121 tgccaagaacagaactaagaagacatgttcacctctctttcccttcacattcaatgtgac 180
           |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 tgccaagaactgaactaagaagacatgttcacctctctttcccttcacgttcaatgtgac 380

                                                                       
Query: 181 tcagttgtgaccctgaaaggacagtacattccatctgtctcacacctgcctggtgtctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagttgtgaccctgaaaggacagtacattccatctgtctcacacctgcctggtgtctgg 440

                                                                       
Query: 241 gatccatctctgggattgacagcatctgtgtcctctgatttctactctttagaaaaaaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatccatctctgggattgacagcatctgtgtcctctgatttctactctttagaaaaaaaa 500

                                                                       
Query: 301 aatcaatgcccacatcatattgttaacctttcaaaaagctcaagaagagtgacaagaaag 360
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcaatgcccacatcatattggtaacctttcaaaaagctcaagaagagtgacaagaaag 560

                                                                       
Query: 361 caaaattgctcccagggagcttcaattgctggtgaaaggctgatccaataagacctcctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaaattgctcccagggagcttcaattgctggtgaaaggctgatccaataagacctcctg 620

                                                                       
Query: 421 gcagaaagcacagacattccaggtcattccaaatgcctgtgacaatatgtcagtacactg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcagaaagcacagacattccaggtcattccaaatgcctgtgacaatatgtcagtacactg 680

                                                                       
Query: 481 tctgactgcgtgtgtagtagtgactcttaatatggttatttactaaccatgtgttgccat 540
           |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct: 681 tctgactgcgtgtgtagtagtgactcttaacatggttatttactaaccacgtgttgccat 740

                                                                       
Query: 541 ggaaacaaggtaaagcaacatgctcttgagacacagagacttagcatgttagagaggtgg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ggaaacaaggtaaagcaacatgctcttgagacacagagacttagcatgttagagaggtgg 800

                                                                       
Query: 601 tgcctaaatcccattctacagccagtacgctgttcacacaggcagaccacacccctctag 660
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 801 tgcctaaatcccattctacagccagtaggctgttcacacaggcagaccacacccctctag 860

                                        
Query: 661 gcctcctattcttccttgggacatgagaa 689
           |||||||||||||||||||||||||||||
Sbjct: 861 gcctcctattcttccttgggacatgagaa 889


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)