BAC Information

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BAC

Clone NameMSMg01-177O04
Chromosome15 (Build37)
Map Location 10,296,908 - 10,408,656
singlet/doubletdoublet
Overlap geneAgxt2, 4930461P20Rik, Bxdc2
Upstream geneUgt3a2, LOC383094, Capsl, Il7r, C230086A09Rik, Prlr
Downstream geneRad1, 4930401A09Rik, EG666579, Rai14, C1qtnf3, Amacr, Slc45a2, Rxfp3, Adamts12, Tars
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177O04.T7 (MSMg01no177_o04.b1)MSMg01-177O04.TJ (MSMg01no177_o04.g1)
ACCAG372142AG372143
length718718
length of high quality
(start - end)
588 (71 - 658)636 (77 - 712)
definitionCHROMAT_FILE: MSMg01no177_o04.b1 PHD_FILE: MSMg01no177_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:32 2005CHROMAT_FILE: MSMg01no177_o04.g1 PHD_FILE: MSMg01no177_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,296,908 - 10,297,495)(10,408,021 - 10,408,656)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGATAACCAAACACACAGTCTTTATCTTTTTAATATGCTTCA
AGCAGGACAGTAGCTCGGCAGTTGCCTACCCTCCATGTTATTAGAATCTG
CCTACCTATCGATAACCCTGAGCTATTATTCACTATGTTTCATCTGGGTG
CCTCTAGCTCTAATTACCCAGCCCTCAGGGCCATGCTTTTATAGCTTAGC
TAACCCCTGGCAGCTTCTCCTTTCTCCTCTCCTGCATGTTCTTCCATTAT
TCTATGGCAATTTCTTCCTCCTCCTTCCTTCCTCATGATCCTATCTCCCC
AAGTCTAAGAAACCTTAACCCCACCTATGTCTCTTCTTTCCAGGTATTGG
CTGTTGGCATCTTTATTTACCAATTACAATTAACTAGGGGTGGGGCACAG
TCACTCAGGCTCTTATGTACAGACTCTCTTATCTTTGGGGTAACCAGTCC
TGGGGCCCCCAAATTAGCATTAGAATACAAGTAGTATTAGTACTACAAAA
AGCTAGGTTGGAAAGCCATGGAGGAAGGAAGGGAGTCTGAAATAGTCCCC
AAAACATACGAAATAGAATTGGGCATCAAGAGAAGGCACAGAAAGTGGGC
CAACAGGAGCCATACTTTCTATAAAGAATCTTCTCGTCATGACCTTCCTG
ATGAGGGGTGCACATCAG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTAATTCAGGTAATTCTCTTTCTT
AGAAAGTAGTTTTAGGAATATACCAGACAAAGCACATTTGACTTAGACAT
CAAAACATATGCTGTGCCTTGGAATGAAAAACTAACAGACCTTGTTTTTA
TAACAAGATCTTCAGTACGCCACGATACCATCCCAAGAGTCAGCCGTTTG
TGGACCACGTGTTTACGTTCACCATTCTGGATAACAGGATATGGTTCCGG
AACTTCCAGGTTGGCTTTGCTTTATTTTTCATGTTTTAAATATTTGGGAA
TATGTAGCATTACCGACAATGCAAATTTTTAAGTGGCTCCATTTCTCCTT
CTGATATTTGTGGCAAGTGATTGCTGCCACACACCTGAAGTGATCTCTAC
TTGCTTCTTTCTCTGCTTGTCAGCTGATGTGGCATCAACATTTGTAACAA
GCTGCTCTACTCATTTAAAGAGAGAACGTGGACTGGAACTCTGTGCTGAT
TGGTTCTAGCCCTTCCTGAGTCCTGTAAAGGACAGTTCATTATTTCTCTT
CCTGAAATATAGCAGGGAGAGCGTCGGAGGCTGTTAAGGCTTAGGAAAAC
ATAATTGCTACGGTAATAACTTTTAGTTAAGTCATGAGATGATTCCTCAA
TCAGGGGAAGTGAGGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_o04.b1 MSMg01no177_o04.b1 CHROMAT_FILE:
MSMg01no177_o04.b1 PHD_FILE: MSMg01no177_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:32 2005
         (588 letters)



>mm_chr15_10296708_10297695
          Length = 988

 Score = 1083 bits (560), Expect = 0.0
 Identities = 581/588 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacagtctttatctttttaatatgcttcaagcaggacagtagctcggcagttgcctacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacagtctttatctttttaatatgcttcaagcaggacagtagctcggcagttgcctacc 260

                                                                       
Query: 61  ctccatgttattagaatctgcctacctatcgataaccctgagctattattcactatgttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccatgttattagaatctgcctacctatcgataaccctgagctattattcactatgttt 320

                                                                       
Query: 121 catctgggtgcctctagctctaattacccagccctcagggccatgcttttatagcttagc 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catctgggtgcttctagctctaattacccagccctcagggccatgcttttatagcttagc 380

                                                                       
Query: 181 taacccctggcagcttctcctttctcctctcctgcatgttcttccattattctatggcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacccctggcagcttctcctttctcctctcctgcatgttcttccattattctatggcaa 440

                                                                       
Query: 241 tttcttcctcctccttccttcctcatgatcctatctccccaagtctaagaaaccttaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcttcctcctccttccttcctcatgatcctatctccccaagtctaagaaaccttaacc 500

                                                                       
Query: 301 ccacctatgtctcttctttccaggtattggctgttggcatctttatttaccaattacaat 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 501 ccacctatgtctcttctttccaggtattagctgttggcatctttatttaccaattacaat 560

                                                                       
Query: 361 taactaggggtggggcacagtcactcaggctcttatgtacagactctcttatctttgggg 420
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 561 taactaggggtggggcacagtcactcagtctcttatgtacagactctcttatctttggag 620

                                                                       
Query: 421 taaccagtcctggggcccccaaattagcattagaatacaagtagtattagtactacaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaccagtcctggggcccccaaattagcattagaatacaagtagtattagtactacaaaa 680

                                                                       
Query: 481 agctaggttggaaagccatggaggaaggaagggagtctgaaatagtccccaaaacatacg 540
           |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 681 agctaggttggaaagccatggaagaaggaagggagtctgaaataatccccaaaacatacg 740

                                                           
Query: 541 aaatagaattgggcatcaagagaaggcacagaaagtgggccaacagga 588
           ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 aaatagaattgggcatcaagagaaggcacagaaagtgggccaagagga 788


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space:   565284
Effective search space used:   565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no177_o04.g1 MSMg01no177_o04.g1 CHROMAT_FILE:
MSMg01no177_o04.g1 PHD_FILE: MSMg01no177_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:32 2005
         (636 letters)



>mm_chr15_10407821_10408856
          Length = 1036

 Score = 1199 bits (620), Expect = 0.0
 Identities = 632/636 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaattcaggtaattctctttcttagaaagtagttttaggaatataccagacaaagcaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 836 ttaattcaggtaattctctttcttagaaagtagttttaggaatataatagacaaagcaca 777

                                                                       
Query: 61  tttgacttagacatcaaaacatatgctgtgccttggaatgaaaaactaacagaccttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tttgacttagacatcaaaacatatgctgtgccttggaatgaaaaactaacagaccttgtt 717

                                                                       
Query: 121 tttataacaagatcttcagtacgccacgataccatcccaagagtcagccgtttgtggacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tttataacaagatcttcagtacgccacgataccatcccaagagtcagccgtttgtggacc 657

                                                                       
Query: 181 acgtgtttacgttcaccattctggataacaggatatggttccggaacttccaggttggct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 acgtgtttacgttcaccattctggataacaggatatggttccggaacttccaggttggct 597

                                                                       
Query: 241 ttgctttatttttcatgttttaaatatttgggaatatgtagcattaccgacaatgcaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 ttgctttatttttcatgttttaaatatttgggaatatgtagcattaccgacaatgcaaat 537

                                                                       
Query: 301 ttttaagtggctccatttctccttctgatatttgtggcaagtgattgctgccacacacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 ttttaagtggctccatttctccttctgatatttgtggcaagtgattgctgccacacacct 477

                                                                       
Query: 361 gaagtgatctctacttgcttctttctctgcttgtcagctgatgtggcatcaacatttgta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaagtgatctctacttgcttctttctctgcttgtcagctgatgtggcatcaacatttgta 417

                                                                       
Query: 421 acaagctgctctactcatttaaagagagaacgtggactggaactctgtgctgattggttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 acaagctgctctactcatttaaagagagaacgtggactggaactctgtgctgattggttc 357

                                                                       
Query: 481 tagcccttcctgagtcctgtaaaggacagttcattatttctcttcctgaaatatagcagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 tagcccttcctgagtcctgtaaaggacagttcattatttctcttcctgaaatatagcagg 297

                                                                       
Query: 541 gagagcgtcggaggctgttaaggcttaggaaaacataattgctacggtaataacttttag 600
           |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 296 gagagcgtcggaggctgttacggcttaggaaaacataattgctacagtaataacttttag 237

                                               
Query: 601 ttaagtcatgagatgattcctcaatcaggggaagtg 636
           ||||||||||||||||||||||||||||||||||||
Sbjct: 236 ttaagtcatgagatgattcctcaatcaggggaagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)