BAC Information

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BAC

Clone NameMSMg01-177P14
Chromosome15 (Build37)
Map Location 64,733,646 - 64,733,933
singlet/doubletsinglet
Overlap geneAdcy8
Upstream gene9030605I04Rik, 4933426G20Rik, 0910001A06Rik, Ddef1
Downstream geneLOC268812, LOC100040790, LOC665836, C920006C10Rik, Oc90
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-177P14.T7 (MSMg01no177_p14.b1)MSMg01-177P14.TJ (MSMg01no177_p14.g1)
ACCAG372205AG372206
length737740
length of high quality
(start - end)
288 (71 - 358)287 (76 - 362)
definitionCHROMAT_FILE: MSMg01no177_p14.b1 PHD_FILE: MSMg01no177_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:39 2005CHROMAT_FILE: MSMg01no177_p14.g1 PHD_FILE: MSMg01no177_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGTATTCCTCTCAGCCTAAACTGATATGTCTTCTGTCTCAGAT
ACTACAGGAAAGTTAATGGACCCCTTTTTCTGTCTTCTATACATAATCCA
GTTAGCATCAAATTCTTCTTCATGAAGATAACAAATGATGCACTTTTATT
TATTATGTAAGTCTTATTGAGATCCAGCAGCAGACATAAAAGCAGTAAGA
CAATAATAATTACATTTAATAGAATGGATGCTTGCTTACCTCTTAAATGG
TAACATCTATTTAAAGCTTTGTAAACCACAAGTTCTGTTACAGGACACAA
GCTATTAATTTTTTTTTATCACCCCCCCACAGGAATTTTGCGTGGGATTC
TTGGAGTTACAACTTGCCAGATACATAAAGACATCTTATTTTGGTGCAAT
TCTTATTGAGCTTGGTACTGAAACTGTTTAATCTGCTAACTTTAGTCTTC
CCTACCATTTGAACAGGAGAGAAACACCACGAACTTGGAAGAACCTAATT
GAACCTAAGTTTAATTTCCTAGACATTGAAATTCTTCAGCCAGAGCAGTG
TAGTGGATCACACTTGTATCCTCAGCAGAACAATTTGAGTTTATGGCCAG
CTGGAGACACATATGGGAGATACACACACACACACACACACACACACACG
GTCACACTTTATATTTTTAACCCATAGTTTACCACTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCACCCTCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCAGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGTCATATATCCACACGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATAAATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGGATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCATAACCTAGGATACCCAAGATATAAGATACAATTTCCTAA
ACACATGAAACTCAAGACAAATGAAGACTGAAGTGTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no177_p14.b1 MSMg01no177_p14.b1 CHROMAT_FILE:
MSMg01no177_p14.b1 PHD_FILE: MSMg01no177_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:39 2005
         (288 letters)



>mm_chr15_64733446_64734133
          Length = 688

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcctaaactgatatgtcttctgtctcagatactacaggaaagttaatggacccctttttc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||
Sbjct: 201 gcctaaactgatatgtcttctgtctcagatactacaggaaagttaagggactcatttttc 260

                                                                       
Query: 61  tgtcttctatacataatccagttagcatcaaattcttcttcatgaagataacaaatgatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcttctatacataatccagttagcatcaaattcttcttcatgaagataacaaatgatg 320

                                                                       
Query: 121 cacttttatttattatgtaagtcttattgagatccagcagcagacataaaagcagtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttttatttattatgtaagtcttattgagatccagcagcagacataaaagcagtaaga 380

                                                                       
Query: 181 caataataattacatttaatagaatggatgcttgcttacctcttaaatggtaacatctat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caataataattacatttaatagaatggatgcttgcttacctcttaaatggtaacatctat 440

                                                           
Query: 241 ttaaagctttgtaaaccacaagttctgttacaggacacaagctattaa 288
           ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaagctttggaaaccacaagttctgttacaggacacaagctattaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)