BAC Information

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BAC

Clone NameMSMg01-178B04
Chromosome15 (Build37)
Map Location 67,170,039 - 67,170,492
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc6, LOC100040860, Tmem71, LOC100040881, Phf20l1, Tg, Sla, Wisp1, Ndrg1, LOC100040667, St3gal1
Downstream geneZfat1, LOC100041000
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178B04.T7 (MSMg01no178_b04.b1)MSMg01-178B04.TJ (MSMg01no178_b04.g1)
ACCAG372270AG372271
length744775
length of high quality
(start - end)
458 (46 - 503)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no178_b04.b1 PHD_FILE: MSMg01no178_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:46 2005CHROMAT_FILE: MSMg01no178_b04.g1 PHD_FILE: MSMg01no178_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:50:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCTCTTGCCTTGCTAACCTAGTCATAATTCGTAAAATAGATTA
GCATATGAGGACTTCAGCACAGAGCTCAGTAGAGTTCTGGACCAGTGTGA
TGAGTGTAAACTCACTTCTGGTTTGGTGTTTTATTCTTGTACCTTAGAAC
TGCCTCTGGTCTAGGCAAAGCTTCCTGCTCACAAAGCTAGGTTAGAGCAC
TCCCCAGCTCACTTTGCACAAGTGAAGGCGCTGATGCCCCACTAGGAGTC
CTCCTCCAAAAAGTAACTTCAGGTTTAACTTTAAAATTGATGATGCTCAC
ACACCAAGCAATTCCACATCCCCCAGGGAAGCTGATGACAGAGCCCACCA
GTACCAATGAAAGTGACCCTGCACATCACCAAGAATTTCTTTAAGTAATG
CCTGTTTCCTTAGAATTAGGAGTGGCACATGCTCACTGCAGAATATTTTG
GTGGTCACGTGAAAACAAGAACAAGAAAATAAGTTTCACATACAATTCCC
AGTTCTAGAAAAACGAAGTACTATCAACATTTCATTTGATTCTCTTAATG
TTTATTTTATCTCTTTCCTATGCATATGTCAATACTTTTTAATTTTCTCT
TCCCCAAACTCTTTTATGAGCGAGCCTAACTTTACCTGCCTCTTATAATA
TTTATTACCTTCTCTTATTGGTATTTATTATCCCGCCCTAATAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATTTAATTATTCATACAGTTAG
AAAGAGCAATTTCCAAATTCATCTGGAACAACAAAAATCCCAGGATAGCG
AAAAACTATTCTCAACAATAAAAGAACTTCTGGGGGAAACACCATCCCTG
ACCTCAAACTGTACTACAGAGCAAAACTGAATGGTATTGGTACAATAATA
GGTAGGTAGATCAATGGAATATAATGAAGACCCAGAAATGAATCCACACA
CCTATGTCACTTGATCTTTGCCAAAGGAGCTAAAACCATCTAGTCAAAAA
AAAAAAAGACAACATTCTCAACAAATGGTGCTGGTTCAACTCTCTGTTAG
CATATAGAAGAATGCACACCCACCTATTTTTCTCTCCTTGTACCAAGTTC
AAGTTCAAGTGAATCAAGGACCTCCATATAAAACCAGATTCACTGAAACT
AGGAGAAAAGAAAGTTGGGGAGAGCCCGGAGCACATGGCTACAGGGTTAA
GATTTTCCTGAACCGAACACCACTAATTTTAAGCTCCCACCATTTCCAAT
GTCCCCTTGGTGCTTTTATTAATACCATCCCCCCTCTTTGTTACGGCCCC
CCGTTACCTCCCTTTATTATCACCCTGTCACCTACGATTAAAGAAAATAT
TTATTTTTCTACTCCTTCTCCCCTACTCTTCCTTCTTTTCTTCTTTTCTT
TACTCCCCTTCCCTCTATCGGCACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_b04.b1 MSMg01no178_b04.b1 CHROMAT_FILE:
MSMg01no178_b04.b1 PHD_FILE: MSMg01no178_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:46 2005
         (458 letters)



>mm_chr15_67169835_67170692
          Length = 858

 Score =  803 bits (415), Expect = 0.0
 Identities = 445/455 (97%), Gaps = 2/455 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttctcttgccttgctaacctagtcataattcgtaaaatagattagcatatgag 64
           |||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 658 gaatcctttctcttggcttgctaacctagtcataatttgtaaaatagattagcatatgag 599

                                                                       
Query: 65  gacttcagcacagagctcagtagagttctggaccagtgtgatgagtgtaaactcacttct 124
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 598 gacttcagcacagagctcagtagagttctggatcagtgtgatgagtgtaaactcacttct 539

                                                                       
Query: 125 ggtttggtgttttattcttgtaccttagaactgcctctggtctaggcaaagcttcctgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ggtttggtgttttattcttgtaccttagaactgcctctggtctaggcaaagcttcctgct 479

                                                                       
Query: 185 cacaaagctaggttagagcactccccagctcactttgcacaagtgaaggcgctgatgccc 244
           || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 cagaaagctaggttacagcactccccagctcactttgcacaagtgaaggcgctgatgccc 419

                                                                       
Query: 245 cactaggag-tcctcctccaaaaagtaacttcaggtttaactttaaaattgatgatgctc 303
           ||||||||| | |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 418 cactaggagat-ctcctccaaaaagttacttcaggtttcactttaaaattgatgatgctc 360

                                                                       
Query: 304 acacaccaagcaattccacatcccccagggaagctgatgacagagcccaccagtaccaat 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acacaccaagcaattccacatcccccagggaagctgatgacagagcccaccagtaccaat 300

                                                                       
Query: 364 gaaagtgaccctgcacatcaccaagaatttctttaagtaatgcctgtttccttagaatta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gaaagtgaccctgcacatcaccaagaatttctttaagtaatgcctgtttccttagaatta 240

                                              
Query: 424 ggagtggcacatgctcactgcagaatattttggtg 458
           |||||||||||||||||||||||||||||||||||
Sbjct: 239 ggagtggcacatgctcactgcagaatattttggtg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)