Query= MSMg01no178_b06.b1 MSMg01no178_b06.b1 CHROMAT_FILE:
MSMg01no178_b06.b1 PHD_FILE: MSMg01no178_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:47 2005
(653 letters)
>mm_chr15_8247271_8248322
Length = 1052
Score = 1170 bits (605), Expect = 0.0
Identities = 639/651 (98%), Gaps = 4/651 (0%)
Strand = Plus / Plus
Query: 5 gaattctggggcacctagagctacatagtatggtcctgtctcaaaaaacaaaatccagcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctggggcacctagagctacatagtatggtcctgtctcaaaaaacaaaatccagcc 264
Query: 65 ccaaaactatgaaatatacaaaacgcaagagagattatggttgacactgattgtatgttt 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccaaaactatgaaatatacaaaaagcaagagagattatggttgacactgattgtatgttt 324
Query: 125 tcagtcggggaaacatggagacatgcctgtgactctagctagcactagggagcctggggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tcagtcggggaaacatggagacatgcctgtgactctagctagcactagggagcctggggc 384
Query: 185 aggaagaccacctaagttagttaaggggttcaagatcagcttaggcaacacagtgagaca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggaagaccacctaagttagttaaggggttcaagatcagcttaggcaacacagtgagaca 444
Query: 245 caggccggaaataaattcataagtaaataaaaaggaagacatgttactatttaaattgat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggccggaaataaattcataagtaaataaaaaggaagacatgttactatttaaattgat 504
Query: 305 tttaaagaaaaacaatcataaaagtagtaaccaaggcagcaataacttgcagatcttcac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttaaagaaaaacaatcataaaagtagtaaccaaggcagcaataacttgcagatcttcac 564
Query: 365 cactaagcttatctactttatgaattgtaacctagaactcattaacgtttctctttctct 424
||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||
Sbjct: 565 cactaagcttatctactctatgaattgtaacctggagctcattaacgtttctctttctct 624
Query: 425 tgttaaaagcaatcatcattacctgtgcatacgcgatgtgtgtcaggggcagcatgtgac 484
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 tgttaaaagccatcatcattacctgtgcatacgcaatgtgtgtcaggggcagcatgtgac 684
Query: 485 agagagcctctttctgcttgtagagtggttctagaaatttgactcaggctacctaccagg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agagagcctctttctgcttgtagagtggttctagaaatttgactcaggctacctaccagg 744
Query: 545 cttgcatggcaaaagctttactctgagttgtccggttagctagcccacttttgctctttt 604
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 745 cttgcatggcaaaagctttactctgagttgtccggctagctagcccacttttgctctttt 804
Query: 605 ct-cctgccccacccccc-aacagggtttctctgtgtagccctggctgtcc 653
|| || ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct: 805 cttcc--ccccacccccccaacagggtttttctgtgtagccctggctgtcc 853
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1052
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1042
Effective search space: 670006
Effective search space used: 670006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_b06.g1 MSMg01no178_b06.g1 CHROMAT_FILE:
MSMg01no178_b06.g1 PHD_FILE: MSMg01no178_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:47 2005
(603 letters)
>mm_chr15_8392387_8393389
Length = 1003
Score = 1104 bits (571), Expect = 0.0
Identities = 595/603 (98%)
Strand = Plus / Minus
Query: 1 taagtgtttttgagcgtacgtggagataaggatgaaacctattttctttcaaaggataga 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 taagtgtttttgagcgtacatggagataaggatgaaacctattttctttcaaaggataga 744
Query: 61 agttaagttgcacttagaatctttcggaggtttaaaacacacatacatatacacacatag 120
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 743 agttaagttgcacttagaatctttgggaggtttaaaacacacatacatatacacacatag 684
Query: 121 aaggtgccatcctttcttgtcagggcagatcttagtgagtcccaggattgtcattggctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaggtgccatcctttcttgtcagggcagatcttagtgagtcccaggattgtcattggctg 624
Query: 181 tttgtaccatgatgtttgactgtgtaatgagcgaggtgtcattttaataggtcaaatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tttgtaccatgatgtttgactgtgtaatgagcgaggtgtcattttaataggtcaaatgta 564
Query: 241 tctgtagatgctggagaaaaatatcagttctgtatcttaacaagttctagttcacgagta 300
||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct: 563 tctgtagatgctggagaaaaataccagttctgtatcttaccaagttctagttcacgagta 504
Query: 301 agttagatgttgggagcttgtttctggcggctttggcaatggaagttggtgtaagacgga 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 503 agttagatgttgggagcttgtttctcgcggctttggcaatggaagttggtgtaagacgga 444
Query: 361 aatacctttttaaaagtcctcagactttaaaaattgcacagaaaaagaaatgtcccgttt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aatacctttttaaaagtcctcagactttaaaaattgcacagaaaaagaaatgtcccgttt 384
Query: 421 gatactttgtttcatactcgctgagggagaactcatttgttaaaaggtagcaacactact 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gatactttgtttcatattcgctgagggagaactcatttgttaaaaggtagcaacactact 324
Query: 481 caaggcggccccttgtaatggtagtggttaaaatagccctttaaatattctgggtcttaa 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 caaggcggcccctcgtaatggtagtggttaaaatagccctttaaatattctgggtcttaa 264
Query: 541 gtttttgtcactgtagaataacttttttgcgggttatttttgagtttaacatgctgctta 600
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 gtttttgtcactgtagaataacttttttgcgggttatttttgagtttagcatgctgctta 204
Query: 601 caa 603
|||
Sbjct: 203 caa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
