Query= MSMg01no178_j12.b1 MSMg01no178_j12.b1 CHROMAT_FILE:
MSMg01no178_j12.b1 PHD_FILE: MSMg01no178_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:25 2005
(603 letters)
>mm_chr15_50456051_50457053
Length = 1003
Score = 1013 bits (524), Expect = 0.0
Identities = 536/540 (99%)
Strand = Plus / Minus
Query: 5 gaattcaagcatagccactggaaaactggaaagtgttttctaaggaaaacaaagatgtaa 64
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gaattcaagcagagagactggaaaactggaaagtgttttctaaggaaaacaaagatgtaa 481
Query: 65 actccatgtgtgctggtaaggagcaccgctggtacattgtcttcattcagtatttgttct 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 actccatgtgtgctggtaaggagcaccgctggtacattgtcttcattcagtatttgttct 421
Query: 125 attacttcaaaataaattccttatgatactagagttaaatatgttactgagaggcatgcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 attacttcaaaataaattccttatgatactagagttaaatatgttactgagaggcatgcc 361
Query: 185 gcaaaacatatgaggtatgctttctaccacacaatatgaagacactcatctgcgaattct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gcaaaacatatgaggtatgctttctaccacacaatatgaagacactcatctgcgaattct 301
Query: 245 tttccactctccattgggagggccaatgccaagctttaccatggtcttccagtctgtccg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tttccactctccattgggagggccaatgccaagctttaccatggtcttccagtctgtccg 241
Query: 305 cctaatctatggaagcattctagtatctcctgtgacatttatttttattatttatattta 364
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 cctaatctatagaagcattctagtatctcctgtgacatttatttttattatttatattta 181
Query: 365 cacttactttatttatcttcatgtgtatgaatgtatgcacaagccaatggttaccaagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 cacttactttatttatcttcatgtgtatgaatgtatgcacaagccaatggttaccaagaa 121
Query: 425 atgattctgtggagttggtggactcattatactttatagagatccctgcaaatcaacttg 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atgattctgtggagttggtggactcattatactttatagagatccctgcaaatcaacttg 61
Query: 485 attgaactggagtcatcaggcttatacgtcaagcatttgtgccattgagctgtgtctcct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60 attgaactggagtcatcaggcttatacgtcaagcatttgtgccattgagctgtgtctcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no178_j12.g1 MSMg01no178_j12.g1 CHROMAT_FILE:
MSMg01no178_j12.g1 PHD_FILE: MSMg01no178_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:25 2005
(511 letters)
>mm_chr15_50264617_50265527
Length = 911
Score = 936 bits (484), Expect = 0.0
Identities = 501/510 (98%), Gaps = 6/510 (1%)
Strand = Plus / Plus
Query: 1 actctgtagaccaggctggcctcaaactcagaaattcacctgcctctacctcccaagtgc 60
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 207 actctgtagaccaggctggcctca------gaaattcacctgcctctacctcccaagtgc 260
Query: 61 tagaattaaaggtgtgtgccatcaccgcctggctagaatgtgcttttctaacagaacaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagaattaaaggtgtgtgccatcaccgcctggctagaatgtgcttttctaacagaacaat 320
Query: 121 tttaatgaacaatcagaaaaaaaattcttcatatcatgacaatgaggtactaaagagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaatgaacaatcagaaaaaaaattcttcatatcatgacaatgaggtactaaagagctc 380
Query: 181 attatatattggtatgtagagctgaataggacctggactataaattagaattaccataaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attatatattggtatgtagagctgaataggacctggactataaattagaattaccataaa 440
Query: 241 atatagttttcctttgaaaagagtttaaagaatttcatataccataaagtcttctgcctg 300
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct: 441 atagagttttcctttgaaaagagtttaaagaatttcatataccaaaaagtcttctgtctg 500
Query: 301 atataaggcaaatatccttaacaaattaatcaacatctttctttaaaaaatacttcatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atataaggcaaatatccttaacaaattaatcaacatctttctttaaaaaatacttcatga 560
Query: 361 acaaatgcattcattttcttaagataatctcaagtgtggtcttactgacctaaaatgtat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acaaatgcattcattttcttaagataatctcaagtgtggtcttactgacctaaaatgtat 620
Query: 421 ataacctgttatatctctaaatgctgtccatcattgtctaatgcagctggtctaatttct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataacctgttatatctctaaatgctgtccatcattgtctaatgcagctggtctaatttct 680
Query: 481 actatcatcatcaacagttcaaaactctta 510
||||||||||||||||||||||||||||||
Sbjct: 681 actatcatcatcaacagttcaaaactctta 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space: 451401
Effective search space used: 451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
