BAC Information

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BAC

Clone NameMSMg01-178O19
Chromosome15 (Build37)
Map Location 21,183,518 - 21,184,097
singlet/doubletsinglet
Overlap geneCdh12
Upstream geneAcot10, LOC100040302
Downstream geneLOC100040351
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-178O19.T7 (MSMg01no178_o19.b1)MSMg01-178O19.TJ (MSMg01no178_o19.g1)
ACCAG372867AG372868
length734725
length of high quality
(start - end)		54 (50 - 103)580 (75 - 654)
definitionCHROMAT_FILE: MSMg01no178_o19.b1 PHD_FILE: MSMg01no178_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:49 2005CHROMAT_FILE: MSMg01no178_o19.g1 PHD_FILE: MSMg01no178_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:51:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGGA
TTCTCACAAACCTGGAGTTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGACCCTNCTACCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCA
CATTATACCCCCTTATGAAACATTTATTTCTCATCCCATGCTCCCATATT
AATCCAATATGCTAAAAATATACACTATTCAACAATTTCTCGTACCCGCC
CGTTATTAACCCATCTCATCTTCCCACCCCCCCG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTTTATTTTTCATTGTTTTTCT
AAGGAACAAAGTATCATTTACACCCAGAACATATTCTTCATTGTGTACTT
TACACTTATATTAAAGGATTGAAACTCAATATAAGAAAATATATTTTAAA
TATATTTTGGAAACACTTAAATAAATATAGTCACTCTTGTATACACTTGA
GTGTATTGAACTAGAAAGTATTGACTTGTCTTTCAGTTATTGGATATAAA
TAACTACTCAGATTAATACAGCCTCACTATAATTCTGTTGATAGTTCAAT
TCATTGATTATATATTGGAGCTGCATTTGCCAAGATAAACAATGATTTAG
CAGTAAGGATCTATGGAACAAAATTTCTTATTGTTTAGCATTGTTGAATT
TTGGAATGATATAAGCAGTTTCAAAATATTTCTGCATTTTTATAATAGGC
TTAGTCATTGATCACAAAGGATTCAGGCTTGTAAGTCAAGATTCTTTTTT
CAAGTGATTACAATGTGAACTCTGAAATGATACTCTCCCAGGATATGGTA
ACAATGAAAATACAAATGTCTTTTCCATTGACCATTAATTCAAAGCACTA
AAATGATGGCCTGTATTTATGGCAAGACCTACTTTGTAATTATGATACAA
AAACCTTTAACGTCAACCTTCACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no178_o19.g1 MSMg01no178_o19.g1 CHROMAT_FILE:
MSMg01no178_o19.g1 PHD_FILE: MSMg01no178_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:51:49 2005
         (580 letters)



>mm_chr15_21183318_21184297
          Length = 980

 Score = 1114 bits (576), Expect = 0.0
 Identities = 579/580 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcctctttatttttcattgtttttctaaggaacaaagtatcatttacacccagaacatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctctttatttttcattgtttttctaaggaacaaagtatcatttacacccagaacatat 260

                                                                       
Query: 61  tcttcattgtgtactttacacttatattaaaggattgaaactcaatataagaaaatatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcattgtgtactttacacttatattaaaggattgaaactcaatataagaaaatatat 320

                                                                       
Query: 121 tttaaatatattttggaaacacttaaataaatatagtcactcttgtatacacttgagtgt 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 tttaaatatattttggaaacacttaaataaatataggcactcttgtatacacttgagtgt 380

                                                                       
Query: 181 attgaactagaaagtattgacttgtctttcagttattggatataaataactactcagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgaactagaaagtattgacttgtctttcagttattggatataaataactactcagatt 440

                                                                       
Query: 241 aatacagcctcactataattctgttgatagttcaattcattgattatatattggagctgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatacagcctcactataattctgttgatagttcaattcattgattatatattggagctgc 500

                                                                       
Query: 301 atttgccaagataaacaatgatttagcagtaaggatctatggaacaaaatttcttattgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttgccaagataaacaatgatttagcagtaaggatctatggaacaaaatttcttattgt 560

                                                                       
Query: 361 ttagcattgttgaattttggaatgatataagcagtttcaaaatatttctgcatttttata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttagcattgttgaattttggaatgatataagcagtttcaaaatatttctgcatttttata 620

                                                                       
Query: 421 ataggcttagtcattgatcacaaaggattcaggcttgtaagtcaagattcttttttcaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataggcttagtcattgatcacaaaggattcaggcttgtaagtcaagattcttttttcaag 680

                                                                       
Query: 481 tgattacaatgtgaactctgaaatgatactctcccaggatatggtaacaatgaaaataca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgattacaatgtgaactctgaaatgatactctcccaggatatggtaacaatgaaaataca 740

                                                   
Query: 541 aatgtcttttccattgaccattaattcaaagcactaaaat 580
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aatgtcttttccattgaccattaattcaaagcactaaaat 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space:   552900
Effective search space used:   552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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