BAC Information

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BAC

Clone NameMSMg01-179I15
Chromosome15 (Build37)
Map Location 76,126,518 - 76,275,878
singlet/doubletdoublet
Overlap geneOplah, Exosc4, Gpaa1, Cyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5
Upstream geneLOC100041652, LOC100041107, 9030619P08Rik, Ly6h, Gpihbp1, Zfp41, 2810039B14Rik, Top1mt, Rhpn1, Mafa, Zc3h3, LOC672572, Gsdmdc1, Naprt1, Eef1d, Tigd5, Pycrl, Tsta3, Zfp623, Eif2s3x-ps1, Zfp707, 2410075B13Rik, Mapk15, AA409316, K230010J24Rik, Scrib, 2410104I19Rik, Nrbp2, Eppk1, BC024139, Plec1, LOC671535, Grina, Spatc1, LOC100041269
Downstream geneBop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9, LOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-179I15.T7 (MSMg01no179_i15.b1)MSMg01-179I15.TJ (MSMg01no179_i15.g1)
ACCAG373295AG373296
length765743
length of high quality
(start - end)		334 (46 - 379)558 (76 - 633)
definitionCHROMAT_FILE: MSMg01no179_i15.b1 PHD_FILE: MSMg01no179_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:35 2005CHROMAT_FILE: MSMg01no179_i15.g1 PHD_FILE: MSMg01no179_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:52:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,126,518 - 76,126,845)(76,275,321 - 76,275,878)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTCCATGCTACGCCACTCCATTGCCTGCTCCCCAGAGATGCTTCA
GAGGTGAGTGGACTCCTTGAGCCCCAGGCACTACTAGGCCAGCTGAGAGA
AACGTCCCTAGCCTCAGGAATGCTGTCCCTCTCCTAGGGCCCTGAGACAG
GAAAAGGGGCGCCGCCTGTACCTGTCAGGGCCCCTTCATGGGAGTTACCC
AGCTCAGTCCTGGAAGGGCCGGCGTCTGGACTACATCACCTACCGCAGAG
TACCCGGGAGTCGCCTGAGTCCATTTAGTGCCTCACCTCAGGGCTGCTGG
GCTTGCTTTAACTGAACACACCTCTCACCTTGACACCTGCCCGGCTGGAG
GTGGAGCAGGTGCCCCCCCCCTTTTGATNTTGCTGTANTTATGGTTCACT
TGCCTACGGTTCTGACTTTTCTAGCGCCTCGCCCCTTGCCGTTGTTGCCC
TTACTTCGTTAGATTGTCTTATCCCTTCCCCTCGCCCACCTGTCGCACCT
TCAACTTCATTATTACTGTTATTCTTACCCCTTCCCCCGCTTTTCTCCCC
TCTTTTCCCTCTCTTTTTCCTTTCCCCTTTACCCCCTTCCCTCCTTTCGC
TTTTTTTTCCTTTTTTTTTTTTTCTCCCTATTTCCCCCCTTTTTCCCTTC
TTCACTCCCCTTTATTTACTTTTTTTTCTCTTTTTCCACGATTTTTCCAC
TTTTTTTTCTCTGTG

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCAGCCTCAGCTACAGAGCAAA
TTTAAGGTCAGTGTGTCTCAAAACAACATGAGGCTGTGCAACACTATTGT
ACAATTCAGAGGCCCAGTAGACTAAGACAGCAGCAAGAAGCAGAGACCAC
TCCAAGGGAAAAGCTACATCTTACAAAGACAGTGAGCTAGTCACACATGG
GTCCCTTCGCAGCAACCAACAGAAAGCAGAAAGTGACATTACTTCATGGA
TACCACTGGAAACCTTCTCTAAGTTGCAAGACCAAAGAGTCTGTGAGGAA
GGCAGACCACCCTGCCATGGCAAAGCCGTGTGCAGTGCTGTGAAGGACTC
ACACCAGCACCCGAGTGCCCCGAAGCCAGGCTCAGTTCCCCCAGCAGATG
GCTGTGCACCACCCATAAGGCCAGAGCACAAGCTATTCAGATTCTGTGGT
CCTTGGCTGTGATGCTTTCTGTCTAGAGCAGCCCATCACAAGTGTAGTGG
GTGAGCATGGCGGGGGGTCACAGATCTGCATCTCCTATGCCCTGTATGTC
AGAAGTGGTATTCTCCTTTCCCAACCATTTATAAGCATCAAGTCCCATCG
TGGCACATGGGCTTGGTATAACTCCCAGGTCTACCCCACCCCTATATGCT
TGTGACTGGCTCTTCGCGTCCCATTCTACCGAAGACTTCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no179_i15.b1 MSMg01no179_i15.b1 CHROMAT_FILE:
MSMg01no179_i15.b1 PHD_FILE: MSMg01no179_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:35 2005
         (334 letters)



>mm_chr15_76126314_76127047
          Length = 734

 Score =  596 bits (308), Expect = e-175
 Identities = 323/328 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctccatgctacgccactccattgcctgctccccagagatgcttcagaggtgagt 64
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcctccatgctacgccactccattgcctgctccccagagatgcttcggaggtgagt 264

                                                                       
Query: 65  ggactccttgagccccaggcactactaggccagctgagagaaacgtccctagcctcagga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggactccttgagccccaggcactactaggccagctgagagaaacgtccctagcctcagga 324

                                                                       
Query: 125 atgctgtccctctcctagggccctgagacaggaaaaggggcgccgcctgtacctgtcagg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 atgctgtccctctcctagggccctgagacaggaaaaggggcgccgcctgtacctgtcagg 384

                                                                       
Query: 185 gccccttcatgggagttacccagctcagtcctggaagggccggcgtctggactacatcac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccccttcatgggagttacccagctcagtcctggaagggccggcgtctggactacatcac 444

                                                                       
Query: 245 ctaccgcagagtacccgggagtcgcctgagtccatttagtgcctcacctcagggctgctg 304
           |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||
Sbjct: 445 ctaccgcagagtacccgggagtcgcctgagcccagtaagtgcctcacctcagggctgctg 504

                                       
Query: 305 ggcttgctttaactgaacacacctctca 332
           ||||||||||||||||| ||||||||||
Sbjct: 505 ggcttgctttaactgaaaacacctctca 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space:   235625
Effective search space used:   235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no179_i15.g1 MSMg01no179_i15.g1 CHROMAT_FILE:
MSMg01no179_i15.g1 PHD_FILE: MSMg01no179_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:52:35 2005
         (558 letters)



>mm_chr15_76275121_76276078
          Length = 958

 Score = 1033 bits (534), Expect = 0.0
 Identities = 552/558 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaggcagcctcagctacagagcaaatttaaggtcagtgtgtctcaaaacaacatgaggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 758 aaggcagcctcagctacagagcaaatttaaggtcagtgtgtctcaaaacaaaatgaggct 699

                                                                       
Query: 61  gtgcaacactattgtacaattcagaggcccagtagactaagacagcagcaagaagcagag 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 698 gtgcaacactattgtacaattcagaagcccagtagactaagacagcagcaagaagcagag 639

                                                                       
Query: 121 accactccaagggaaaagctacatcttacaaagacagtgagctagtcacacatgggtccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 accactccaagggaaaagctacatcttacaaagacagtgagctagtcacacatgggtccc 579

                                                                       
Query: 181 ttcgcagcaaccaacagaaagcagaaagtgacattacttcatggataccactggaaacct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ttcgcagcaaccaacagaaagcagaaagtgacattacttcatggataccactggaaacct 519

                                                                       
Query: 241 tctctaagttgcaagaccaaagagtctgtgaggaaggcagaccaccctgccatggcaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tctctaagttgcaagaccaaagagtctgtgaggaaggcagaccaccctgccatggcaaag 459

                                                                       
Query: 301 ccgtgtgcagtgctgtgaaggactcacaccagcacccgagtgccccgaagccaggctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 458 ccgtgtgcagtgctgtgaaggactcacaccagcacccgagtgccctgaagccaggctcag 399

                                                                       
Query: 361 ttcccccagcagatggctgtgcaccacccataaggccagagcacaagctattcagattct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ttcccccagcagatggctgtgcaccacccataaggccagagcacaagctattcagattct 339

                                                                       
Query: 421 gtggtccttggctgtgatgctttctgtctagagcagcccatcacaagtgtagtgggtgag 480
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 338 gtggtccttggctgtgatgctctctgtttagagcagcccatcacaagtgtagtgggtgag 279

                                                                       
Query: 481 catggcggggggtcacagatctgcatctcctatgccctgtatgtcagaagtggtattctc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 278 catggcggggggtcacagatctgcatctcctatgccctgtatgtcagaagtggtattcac 219

                             
Query: 541 ctttcccaaccatttata 558
           ||||||||||||||||||
Sbjct: 218 ctttcccaaccatttata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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