BAC Information

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BAC

Clone NameMSMg01-180D03
Chromosome15 (Build37)
Map Location 37,214,881 - 37,215,124
singlet/doubletsinglet
Overlap geneGrhl2
Upstream geneLOC670773, EG268795, EG545101, Ankrd46, 4631426E05Rik, Pabpc1, LOC626746, Ywhaz, Zfp706, LOC670911, LOC667492, LOC100041288
Downstream geneNcald, LOC667498, 4930447A16Rik, LOC100041313, LOC667534, Rrm2b, LOC100041478, Edd1, Odf1, LOC382986, LOC667563
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180D03.T7 (MSMg01no180_d03.b1)MSMg01-180D03.TJ (MSMg01no180_d03.g1)
ACCAG373745AG373746
length707720
length of high quality
(start - end)
652 (44 - 695)245 (123 - 367)
definitionCHROMAT_FILE: MSMg01no180_d03.b1 PHD_FILE: MSMg01no180_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:23 2005CHROMAT_FILE: MSMg01no180_d03.g1 PHD_FILE: MSMg01no180_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:53:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCATTCTGCAGGAGCCGGGGCTGTGTGCTGTGTGGAGATCTGAGCC
AAGCAATTCACTGCCTTGCAGTTGTAACCCCCCTGCCTACGCCAAAGCCT
GGTTTCTGCACCATGCCTCCACGGGGAGAGCCTCTTATCCCAACTCGATC
CATCACCGGGGCCTCCAGATCCCCAAAGGCAGTTATCCCTGCGGTCACCT
TCTCTGGCAGCTCGAGTCTTCTCTTCCACATTCAGGCGGACTGCGCCTTG
GAATATGAAGGTCCTATTAAGGACCTTCTGAACAGGTTCAGAATCATCAA
ACACAACAAAACTGAAATTGGGTAACTTTCCACCACTGTTGATGCGCAGT
TCCACCACATTGCCAACATTTTGGAAAAAAATTCTTCAATTCCGACTTGT
CAACCGTCTCATGTGGCAGGTTCCCAATGAAGAGCTGGTGACTGTCAGGG
TGCCTCACCATCCTTCGAGGTTCCACATCTCCTGGTTTACCAGCCTCACG
AATTGGTCGGGGTCCTCTCTGAGGAGGAATATTGATTTCGCTGCTCTCAA
ACTCTCTGATCTCTCTGAGGCCTTTGTGGTGGAATCTGAGAGTCAGGTTT
AGATTCTGGACAGGGCTGTGATGCTGGCACTTTGACCACATGAGGTGGTG
TCTCTGG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTTAAAAGGGGGGATGGGTGGAGAGG
TTAAGAGCACTGTATTGCTCTTCCAGAGGTTCTGAGTTCAATTCTCAGCA
ACCATATGGTAGCTCACAACCATCAGCAATGAGATCTGGTGCCCTCTTCT
GGCATGCAGGAATATATGCAGGCAGAACGCTGTGTACATAATAAATAAAA
ATTGGTTGAGAGGAATAAATTCACATAAGAAGCAACAACAAAGAACAAAG
TAAGCTAAAATACAGGAGACTACTGTGCGTGGAAGTCCATGTTGGATCAT
ACATTTGTTCCTTCCTGCATTCTACAGGAAAAGTGTAGAGTGGGTATTAG
CAGGGAAAACGGAAAATCTGTGAACTTTGTACCATCTGTGGCCTTTGGCC
TGATCCCAAAGTTAACAAGAATCTGGGTTGGAAGAGGCTGAGAGAAAGTA
ATCCAGGTAAAGAGGGGCGCCATGTTTCAAGGAGAAGCAACCAGTGCAAC
CCTGGAACATATGAGGTATCAAGGGCCACAGTCCTGATCCATCTGTTCTG
CTTTATTCTGGATTTGCTTGATATTATGGCCAGAACCCTTCCCTAAGAGG
TGTAAGTCCTCGCTGGTGTCATGACCCCCATGTTGTTTTCTTCTACCCAC
CCATTTCCACGCTTGTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_d03.g1 MSMg01no180_d03.g1 CHROMAT_FILE:
MSMg01no180_d03.g1 PHD_FILE: MSMg01no180_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:53:23 2005
         (245 letters)



>mm_chr15_37214554_37215198
          Length = 645

 Score =  433 bits (224), Expect = e-126
 Identities = 239/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 2   cagaggttctgagttcaattctcagcaaccatatggtagctcacaaccatcagcaatgag 61
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cagaggtcctgagttcaattctcagcaaccatatggtagctcacaaccatcagcaatgag 512

                                                                       
Query: 62  atctggtgccctcttctggcatgcaggaatatatgcaggcagaacgctgtgtacataata 121
           |||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 511 atctggcgccctcttctggcatgcaggcatatatgcaggcagaacactgtgtacataata 452

                                                                       
Query: 122 aataaaaattggttgagaggaataaattcacataagaagcaacaacaaagaacaaagtaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 aataaaaattggttgagaggaataaattcacataagaagcaacaacaaagaacaaagtaa 392

                                                                       
Query: 182 gctaaaatacaggagactactgtgcgtggaagtccatgttggatcatacatttgttcctt 241
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gctaaaatacaagagactactgtgcgtggaagtccatgttggatcatacatttgttcctt 332

               
Query: 242 cctg 245
           ||||
Sbjct: 331 cctg 328


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)