BAC Information

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BAC

Clone NameMSMg01-180L08
Chromosome15 (Build37)
Map Location 101,705,244 - 101,705,489
singlet/doubletsinglet
Overlap genenone
Upstream geneScn8a, EG668225, Ankrd33, Acvrl1, Acvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77
Downstream geneKrt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2, Csad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-180L08.T7 (MSMg01no180_l08.b1)MSMg01-180L08.TJ (MSMg01no180_l08.g1)
ACCAG374112AG374113
length752830
length of high quality
(start - end)		246 (65 - 310)49 (63 - 111)
definitionCHROMAT_FILE: MSMg01no180_l08.b1 PHD_FILE: MSMg01no180_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:01 2005CHROMAT_FILE: MSMg01no180_l08.g1 PHD_FILE: MSMg01no180_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:54:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
TTCTGTCTATAGAAATCTTTAGTGTAAGGACAGTCTTTTGTCTTGTTCAG
AATGTTGTTTCTGCCCTCCTACAGAGAGGCAGGGTCTTATCACACAGCCC
AGGCTGGCTTGGAACTTGTAATCCTCCTTCATTGGTCTTTACTTGTGCAG
GGGTGTGAAAGAAGCCCTCACTCTTTTCAATAGTTAGGAGATTAAAGCAA
AGCAATTTGAAGTCTTTTGCATGGTTTATGGTATATTGCAGCTTATGTTT
TTATGGTGAATTTTATGCTGTAATTTGTTTTAAGAAACTGGATGGAAAAC
CTAGTGTACCTGATGGAGAGTTGCTTTGTTTAGTAGCATAGTAACTGTTA
AAGCCCCCCGCCGTGAAACTGAAGATCTTATGGCTGCTGGAGGGTTGCTT
TGTTTACCAATACAGTAACTGATAATGTGAGGCTCTTGTCATTTGTCCGG
CTCTGTGCTATGATTTTCTTATGATTTAACTGCTCCTTCTTTACCTGTCT
CACTATACTAGGCTAGTGTTTGCGCCTTTTTTTAATGTCTCAACTTTAAT
AGTCGACCACCTGTATAGAACTCTCAAAAGACTCCATTCCATTTTTTATT
TATAACAACACCCTTTTTCTCTCCTTCTCTTATCCCCCACAACATTTTCA
TCATCTAACACACCATATTTCCTTTTCTATATTTTCTATTAAACAACTTT
CA

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTACAGAAGAATTCACTGCCTGTAGCTCTTCTTGCTGGAAGAGGTGGTG
GTGTATTTGACCCCGGAACAGCTTCTTGCGCTCTTTGTATTATTGAACCC
TCGACCTTCTCCGCTATTTAGTATAGCCCACGATTCTTTCCGATTCTGTC
CGCGTTCATACCACATATCGGAAGTCGCGAAATGATCAATTATTTTTGTC
CCGCCTTCTACTTCTGCCAACGCTTCCCCACCCGGTGCCCATTACCAGGG
GTCACTTTTTTTTTTGCATTTCACCACTTATTTAACGCGCGCATATGTAT
TTTTTTTCCCCCCCCCCCCCCCCCCAAAAATTTACTCTCCTTACATTTCT
TTTATATAACCCCCCCCCTTAAAAAAAAAAACAGATGTTTTTTACTCTAT
TCCCTAACAAAACCTCACCCCAATTATTCCCTTAATCAACGCCCAAACCA
ATTATTAAACTAAACGACCCAAAAGATTAAATACACACCTCCCGATCGTA
TACCATATGCGCCCTCTCTCCGCTCCTACCATAAGCAACGTACTATTCCC
CATCATAATAATCGCAAGCTTGCTATTAACACCGTCGCTCCCCATTATTT
TTTATTTATAACAATAACCCGCTCCCCCCACAATAATAAATAAACCTACG
CCCCCTTGACCCTCACCGCCCCTATGTATTTTATCTCCAGAACAATATCG
CTGCGCGACACGTGGTCGCTCCATTTATTCTTATCCCGGAGACGACCATT
ACAAAACTCATATGTAGATCAACGTCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no180_l08.b1 MSMg01no180_l08.b1 CHROMAT_FILE:
MSMg01no180_l08.b1 PHD_FILE: MSMg01no180_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:54:01 2005
         (246 letters)



>mm_chr15_101704920_101705565
          Length = 646

 Score =  437 bits (226), Expect = e-127
 Identities = 241/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   atctttagtgtaaggacagtcttttgtcttgttcagaatgttgtttctgccctcctacag 60
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 570 atctttagtgtaaggacagtcttttgccttgttcagaatgctgtttctgccctcctacag 511

                                                                       
Query: 61  agaggcagggtcttatcacacagcccaggctggcttggaacttgtaatcctccttcattg 120
           |||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 510 agaaccagggtcttatcacatagcccaggctggcttggaacttgtaatcctccttcattg 451

                                                                       
Query: 121 gtctttacttgtgcaggggtgtgaaagaagccctcactcttttcaatagttaggagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtctttacttgtgcaggggtgtgaaagaagccctcactcttttcaatagttaggagatta 391

                                                                       
Query: 181 aagcaaagcaatttgaagtcttttgcatggtttatggtatattgcagcttatgtttttat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 aagcaaagcaatttgaagtcttttgcatggtttatggtatattgcagcttatgtttttat 331

                 
Query: 241 ggtgaa 246
           ||||||
Sbjct: 330 ggtgaa 325


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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