BAC Information

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BAC

Clone NameMSMg01-181M02
Chromosome15 (Build37)
Map Location 80,657,686 - 80,691,820
singlet/doubletdoublet
Overlap geneTnrc6b
Upstream geneNpcd, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb, Rpl3, Syngr1, Map3k7ip1, Mgat3, EG666948, Smcr7l, Atf4, Rps19bp1, Cacna1i, Enthd1, Grap2, AW544981
Downstream geneAdsl, LOC625672, Rutbc3, Mkl1, LOC675966, Mchr1, Slc25a17, St13, Xpnpep3, Dnajb7, Rbx1, EG383080, Ep300, L3mbtl2, Rangap1, Zc3h7b, Tef, LOC667073, Tob2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-181M02.T7 (MSMg01no181_m02.b1)MSMg01-181M02.TJ (MSMg01no181_m02.g1)
ACCAG374836AG374837
length733718
length of high quality
(start - end)		476 (42 - 517)648 (71 - 718)
definitionCHROMAT_FILE: MSMg01no181_m02.b1 PHD_FILE: MSMg01no181_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:18 2005CHROMAT_FILE: MSMg01no181_m02.g1 PHD_FILE: MSMg01no181_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:55:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,691,451 - 80,691,820)(80,657,686 - 80,658,333)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTTATATTAGTCATAATTAATCCCTTGAAATTTTCATGTTTATACTTTGT
TATTACTTCTTACTCAGCCTTCAATGCAGATGCACACACACAGCACCCAG
CTGTAAAAACTACGTGCTCTATATAAATACTCCCAATATACTCTCAGTGC
AGCCACATTCTCCTTTATTTCCAATAAATTTCCTATTTGTAGAATTCATA
ATAAAAGTCCACAGTAAATCTGATTTATAAACTTAAGACATTATATATAA
ATATATATTATATAAATATTTAAAATATATAACATAATTATATAAATATT
TAAAATATATTATAATATATATTATACATACACACACACACACACACACA
CACACACATATATATATATATATATATATATACATATATATATATATATA
TATATATATATATNATATATATTTGTTTGTNTGTATATATATATATATAT
ATATATATATATAGAGAGTGTGAGTGTGTGTGTGTGAGAGAGATAGATAT
AGAGATTTATATATAATTTATATATATATGTATTAGAATGATTATATTGT
TTTTAGTTAAAAATATATATTTTATTTATATGATGGTGTAATTTTATATA
TTTCGTTAGGTTTGATACTTTATTTAGTACTGTATTGTCTCTTGATTTTA
CGTAATTATTGTCATGTTTTTGCGCTGTGTCGG

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTATAGATGAGAGAAATTTAAAACAGGAA
GGAGAAAGGCCTGGCAATCGTGGTTTGTCCTGTACTTTGCCACTGAAGTA
CTTCCCACTACTATATACATGACAGTGTCCCAGAAGCCAGTTGTAGGGTG
TTTTAGCTGGACTCGAAGTTTATTCACATTTTCATTAGAGCAATATGCCC
ATCTCCTGTTCATTTTATGTTTCCTTGGCATCTAAGTAACTGAGCCAGAC
GGAAAACGGTCCAACATTAGATTCTCTTGCAACATGTCAGCCTTTTAATT
TAATACTTCTAAATGTGAGTACTTGACTAAAATTCCAATTTATTTTAGTC
AAAGTTGATTATAGGCTATTCTCGGGGCAGCCTTGCTTTAGAACATTGAC
TTTCCCCTGAAATTCTCTTAATGATAGCTTATACTTGCCCATTTCTATTG
AAATCACATAGTTGATAGATAGAAATAAATAAAACTAGCATTTGTTTCAT
CCAAGCCTATCTGAATACAGTATTCACAGTATTTATCAAGTTAGGAGTTG
AAAAACCCCAAACCTTTACCACAGAAGACAGCATGGAAAACTGTGAATCC
TAGTTAAGATAAAAATCGGGGGGGGGGGGGGACTTTGAGCCAATGCATGT
CAGCCTCTCAATGTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no181_m02.b1 MSMg01no181_m02.b1 CHROMAT_FILE:
MSMg01no181_m02.b1 PHD_FILE: MSMg01no181_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:18 2005
         (476 letters)



>mm_chr15_80691373_80692248
          Length = 876

 Score =  692 bits (358), Expect = 0.0
 Identities = 367/370 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttatattagtcataattaatcccttgaaattttcatgtttatactttgttatta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gaattcttatattagtcataattaatcccttgaaattttcatgtttatactttgttatta 389

                                                                       
Query: 65  cttcttactcagccttcaatgcagatgcacacacacagcacccagctgtaaaaactacgt 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cttcttactcagtcttcaatgcagatgcacacacacagcacccagctgtaaaaactacgt 329

                                                                       
Query: 125 gctctatataaatactcccaatatactctcagtgcagccacattctcctttatttccaat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gctctatataaatactcccaatatactctcagtgcagccacattctcctttatttccaat 269

                                                                       
Query: 185 aaatttcctatttgtagaattcataataaaagtccacagtaaatctgatttataaactta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 aaatttcctatttgtagaattcataataaaagtccacagtaaatctgatttataaactta 209

                                                                       
Query: 245 agacattatatataaatatatattatataaatatttaaaatatataacataattatataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 agacattatatataaatatatattatataaatatttaaaatatataacataattatataa 149

                                                                       
Query: 305 atatttaaaatatattataatatatattatacatacacacacacacacacacacacacac 364
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 148 atatttaaaatatattataatatatattatacacacacacacacacacacacacacacac 89

                     
Query: 365 acatatatat 374
           ||| ||||||
Sbjct: 88  acacatatat 79


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 52
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space:   403556
Effective search space used:   403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no181_m02.g1 MSMg01no181_m02.g1 CHROMAT_FILE:
MSMg01no181_m02.g1 PHD_FILE: MSMg01no181_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:55:18 2005
         (648 letters)



>mm_chr15_80657486_80658533
          Length = 1048

 Score = 1191 bits (616), Expect = 0.0
 Identities = 640/648 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatagatgagagaaatttaaaacaggaaggagaaaggcctggcaatcgtggtttgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatagatgagagaaatttaaaacaggaaggagaaaggcctggcaatcgtggtttgtcc 260

                                                                       
Query: 61  tgtactttgccactgaagtacttcccactactatatacatgacagtgtcccagaagccag 120
           |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 tgtactttgccattgaagtacttcccactactatatacgtgacagtgtcccagaagccag 320

                                                                       
Query: 121 ttgtagggtgttttagctggactcgaagtttattcacattttcattagagcaatatgccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgtagggtgttttagctggactcgaagtttattcacattttcattagagcaatatgccc 380

                                                                       
Query: 181 atctcctgttcattttatgtttccttggcatctaagtaactgagccagacggaaaacggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atctcctgttcattttatgtttccttggcatctaagtaactgagccagacggaaaacggt 440

                                                                       
Query: 241 ccaacattagattctcttgcaacatgtcagccttttaatttaatacttctaaatgtgagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ccaacattagattctcttgcaacatgtcagccttttaatttaatacttcaaaatgtgagt 500

                                                                       
Query: 301 acttgactaaaattccaatttattttagtcaaagttgattataggctattctcggggcag 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agttgactaaaattccaatttattttagtcaaagttgattataggctattctcggggcag 560

                                                                       
Query: 361 ccttgctttagaacattgactttcccctgaaattctcttaatgatagcttatacttgccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccttgctttagaacattgactttcccctgaaattctcttaatgatagcttatacttgccc 620

                                                                       
Query: 421 atttctattgaaatcacatagttgatagatagaaataaataaaactagcatttgtttcat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 621 atttctattgaaatcacatagttgatagatagaaataaataaaactagcttttgtttcat 680

                                                                       
Query: 481 ccaagcctatctgaatacagtattcacagtatttatcaagttaggagttgaaaaacccca 540
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 681 ccaagcctatctgaatacagtattcacagtatttatcaagttagtagttgaaaaacccca 740

                                                                       
Query: 541 aacctttaccacagaagacagcatggaaaactgtgaatcctagttaagataaaaatcggg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 aacctttaccacagaagacagcatggaaaactgtgaatcctagttaagataaaaatccgg 800

                                                           
Query: 601 gggggggggggactttgagccaatgcatgtcagcctctcaatgtccag 648
           |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 801 gggggggggggactttgagccaatgcatgtcagcctctaaatgtccag 848


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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