Query= MSMg01no182_o11.b1 MSMg01no182_o11.b1 CHROMAT_FILE:
MSMg01no182_o11.b1 PHD_FILE: MSMg01no182_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:47 2005
(240 letters)
>mm_chr15_20061092_20061731
Length = 640
Score = 420 bits (217), Expect = e-122
Identities = 234/247 (94%), Gaps = 12/247 (4%)
Strand = Plus / Plus
Query: 5 gaattcatttactatatttttgactattccactccctctccaactccttctatatccttc 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttacaatatttttgactattccactccctctccaactccttctatatccttc 264
Query: 65 ctactaaattcctctcctcttctttattgtagttatgctacatatataggtagttatact 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctactaaattcctctcctcttctttattgtagttatgctacatatataggtagttatact 324
Query: 125 acatatatattaaatacaatatatagttatatatacattatacataatatatcactatac 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acatatatattaaatacaatatatagttatatatacattatacataatatatcactatac 384
Query: 185 tatt------------atatatatatatatatatatatatatatatatatatatatatgg 232
|||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tattttatatttatatatatatatatatatatatatatatatatatatatatatatatgg 444
Query: 233 agagaga 239
|||||||
Sbjct: 445 agagaga 451
Score = 83.9 bits (43), Expect = 8e-21
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 188 tatatatatatatatatatatatatatatatatatatatatat 230
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tatatatatatatatatatatatatatatatatatatatatat 397
Score = 83.9 bits (43), Expect = 8e-21
Identities = 43/43 (100%)
Strand = Plus / Minus
Query: 188 tatatatatatatatatatatatatatatatatatatatatat 230
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatatatatatatatatatatatatatatatatatatatatat 399
Score = 81.9 bits (42), Expect = 3e-20
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 188 tatatatatatatatatatatatatatatatatatatatata 229
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tatatatatatatatatatatatatatatatatatatatata 396
Score = 81.9 bits (42), Expect = 3e-20
Identities = 42/42 (100%)
Strand = Plus / Minus
Query: 189 atatatatatatatatatatatatatatatatatatatatat 230
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 atatatatatatatatatatatatatatatatatatatatat 401
Score = 78.1 bits (40), Expect = 5e-19
Identities = 49/52 (94%), Gaps = 2/52 (3%)
Strand = Plus / Minus
Query: 180 tatactat-tatatatatatatatatatatatatatatatatatatatatat 230
|||| ||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 tata-tatatatatatatatatatatatatatatatatatatatataaatat 391
Score = 76.1 bits (39), Expect = 2e-18
Identities = 48/51 (94%), Gaps = 2/51 (3%)
Strand = Plus / Minus
Query: 180 tatactat-tatatatatatatatatatatatatatatatatatatatata 229
|||| ||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct: 439 tata-tatatatatatatatatatatatatatatatatatatataaatata 390
Score = 66.5 bits (34), Expect = 1e-15
Identities = 49/54 (90%), Gaps = 4/54 (7%)
Strand = Plus / Minus
Query: 171 atatatcactatactat-tatatatatatatatatatatatatatatatatata 223
|||||| | |||| ||| |||||||||||||||||||||||||||||| |||||
Sbjct: 440 atatat-a-tata-tatatatatatatatatatatatatatatatataaatata 390
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 88
Number of extensions: 35
Number of successful extensions: 35
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 10
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no182_o11.g1 MSMg01no182_o11.g1 CHROMAT_FILE:
MSMg01no182_o11.g1 PHD_FILE: MSMg01no182_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:56:47 2005
(629 letters)
>mm_chr15_20169857_20170885
Length = 1029
Score = 1208 bits (625), Expect = 0.0
Identities = 628/629 (99%)
Strand = Plus / Minus
Query: 1 aaacagaatgacttaagtgatgccattacactaagctgtattcaaaaggatcacaaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 aaacagaatgacttaagtgatgccattacactaagctgtattcaaaaggatcacaaattc 770
Query: 61 tgtaaggactgaggttccctccacttaagcaattttaaatatgaattccaatgatctttt 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 tgtaaggactgaggttccttccacttaagcaattttaaatatgaattccaatgatctttt 710
Query: 121 cctgctgtatttgctggtatcattttgggaagtgcgtttaaaacattgcaaacaatgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 cctgctgtatttgctggtatcattttgggaagtgcgtttaaaacattgcaaacaatgtca 650
Query: 181 ggggatgtcttccaataggatgaagtggaagaagaaaataggagaatcaattttgggtca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggggatgtcttccaataggatgaagtggaagaagaaaataggagaatcaattttgggtca 590
Query: 241 tttcacttgttcctgcacacgtatctgcttgctttgagaatgcaagcttcatttctctaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tttcacttgttcctgcacacgtatctgcttgctttgagaatgcaagcttcatttctctaa 530
Query: 301 aagttccaaactgcaatcaaaagtcatttacataaaagacagcaggtaaaaacgttttat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aagttccaaactgcaatcaaaagtcatttacataaaagacagcaggtaaaaacgttttat 470
Query: 361 agcatatttcccttccatacaggaaggaatagagagtagaaaaagaaaaaaaaatcatca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agcatatttcccttccatacaggaaggaatagagagtagaaaaagaaaaaaaaatcatca 410
Query: 421 aagagtttatgaggtcgtttctgaaacaaagttgaacattaaaaaaacagcccttggctt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aagagtttatgaggtcgtttctgaaacaaagttgaacattaaaaaaacagcccttggctt 350
Query: 481 ctgatggaaaatcatttgaagttatacaggttccatggaatgcatttaaggcagtatagc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctgatggaaaatcatttgaagttatacaggttccatggaatgcatttaaggcagtatagc 290
Query: 541 agatggagttttgagtaacatcttgagttaatttatttttgaagtacacaatgagttttt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agatggagttttgagtaacatcttgagttaatttatttttgaagtacacaatgagttttt 230
Query: 601 atgatataattgaattaaaaagtctcaga 629
|||||||||||||||||||||||||||||
Sbjct: 229 atgatataattgaattaaaaagtctcaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
