BAC Information

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BAC

Clone NameMSMg01-183B06
Chromosome15 (Build37)
Map Location 69,707,892 - 69,708,157
singlet/doubletsinglet
Overlap genenone
Upstream geneEG633752, Khdrbs3
Downstream geneLOC383050
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183B06.T7 (MSMg01no183_b06.b1)MSMg01-183B06.TJ (MSMg01no183_b06.g1)
ACCAG375781AG375782
length728768
length of high quality
(start - end)
639 (46 - 684)268 (78 - 345)
definitionCHROMAT_FILE: MSMg01no183_b06.b1 PHD_FILE: MSMg01no183_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:00 2005CHROMAT_FILE: MSMg01no183_b06.g1 PHD_FILE: MSMg01no183_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCTACCTTCTTGAGTTCATTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
TAGGTCCCATTGGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTACTACAAGGAGATAAGTATGGATCAATTCGCA
TTCTTCTACACGATAACAAAAAGTTGTGCCAGCACCAATTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTCTCGAAGATCAAGTC
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCT
CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTT
ATTCTTGAGAATACTTTTTGCTATCCTA
NCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCTTAAGAATTCTTAAGAAT
TTTGCTTTCTGACATATATAATGAGAAGATATTTATATTTTCTACTTACT
GTTGTTTTGATGTAAATTTAAGGAAAAATTAAATGGGGTATGAGGTTTGA
AGTTCTGAGAGCATATTATATGCTAGATAAAAATGGGAAGATATGGTATG
AGAAATAATCTTTGCGGCAAGAAGCAGATTAGAGTCAATTCCTTATTGTT
TGGCTACAAAGAAACTATAGGTAGCATAGAAAAACCCAGATTTAGACAGT
GAAGTTAGAAATATGTACAACACCCCCACGGATTAGGATAACAAGCCGTC
TGTTGTAAAATGACCTTCCCCACTCACTTATTAAAGAAGACAGGCCCCAC
ACACCATGTTGCATGCACCTGTGCCCCGCTCTACAAGGACAGTGTTCCCC
CTCCTCCCCCCCGCTTTATTGCTCCCATCCCCCTTGAACGCGTCCGCTTT
GCCCCTTCCCCCGACCCCACCCCTTCCCGCACCTCCACCGCGCTTACTCC
TCTCATCCTTCCAGGCACCGCCCCCGGTATATGCCCCCGCGCCCCGTCTT
TTCCCCCTTCCCTCCCTCCCCCCCCGCTCACCCCGGCACCTCCGCGTTAT
TCGCGCACCGTGCCGCCCGGACCTTCCCTCCCTCTTTCGCCCCCTACCGC
CCACTCTCTCGCCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_b06.g1 MSMg01no183_b06.g1 CHROMAT_FILE:
MSMg01no183_b06.g1 PHD_FILE: MSMg01no183_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:00 2005
         (268 letters)



>mm_chr15_69707692_69708357
          Length = 666

 Score =  499 bits (258), Expect = e-146
 Identities = 265/268 (98%), Gaps = 2/268 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccttaagaattcttaagaattttgctttctgacatatataatgagaagatatttata 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 201 tttccttaagaattcttaagaattttgctttctgacatata--atgagaagatatttata 258

                                                                       
Query: 61  ttttctacttactgttgttttgatgtaaatttaaggaaaaattaaatggggtatgaggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ttttctacttactgttgttttgatgtaaatttaaggaaaaattaaatggggtatgaggtt 318

                                                                       
Query: 121 tgaagttctgagagcatattatatgctagataaaaatgggaagatatggtatgagaaata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgaagttctgagagcatattatatgctagataaaaatgggaagatatggtatgagaaata 378

                                                                       
Query: 181 atctttgcggcaagaagcagattagagtcaattccttattgtttggctacaaagaaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atctttgcggcaagaagcagattagagtcaattccttattgtttggctacaaagaaacta 438

                                       
Query: 241 taggtagcatagaaaaacccagatttag 268
           ||||||||| ||||||||||||||||||
Sbjct: 439 taggtagcagagaaaaacccagatttag 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 268
Length of database: 666
Length adjustment: 9
Effective length of query: 259
Effective length of database: 657
Effective search space:   170163
Effective search space used:   170163
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)