BAC Information

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BAC

Clone NameMSMg01-183M04
Chromosome15 (Build37)
Map Location 87,131,711 - 87,279,142
singlet/doubletdoublet
Overlap genenone
Upstream geneTbc1d22a, LOC100042309
Downstream geneAW049604, LOC100042329, LOC100042340
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-183M04.T7 (MSMg01no183_m04.b1)MSMg01-183M04.TJ (MSMg01no183_m04.g1)
ACCAG376251AG376252
length731736
length of high quality
(start - end)		541 (46 - 586)463 (73 - 535)
definitionCHROMAT_FILE: MSMg01no183_m04.b1 PHD_FILE: MSMg01no183_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:52 2005CHROMAT_FILE: MSMg01no183_m04.g1 PHD_FILE: MSMg01no183_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:57:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,278,606 - 87,279,142)(87,131,711 - 87,132,173)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCTATTTACCCAAATATGTTTGTCTGCCATGAAATGCCCGTGGG
CTGGGAGCTAAGGCACACCATGCGCACAATCCCTGTCTGCAGGGAGCTGA
GACTCTCAGAGGGAGACTCTAGCTGACACTCTGACTATGGGAAAGATGCA
TGGGCTTAGGGCCAGCATCAGTGAGTGGGAGCTGGTGCCTAGTGCCTCGT
CTGTGGGATGACTCTTAATAGAACACAATGCACGGGCAATGCCAAGAAAA
GAGGCAGGGTGGTGTCAAGGCAGCTGAGGGTGTCTGTGGCATCATTATCT
ATGGGTCAGGATTCAGAGTGAGTCCAGGCTTCTCTGGATTCTATTTCCTC
CTCTGGGAATGATGAGGAGTTAGACCTGAGTCCTCTCTTATACATTTGAG
GAAATCGTTGCCCTATTTCTCAGACCCAGACTCTATGGCAGGGCTGTTTC
ATAACCCAAGAAGGGTACAGTCCAGGCCCTGCTCAACTTTCTCAGTACAA
ATGAGCTTTCTGGGCTGTGGCAGCAGTTCAGATGAGGTCCTGGGCCTCAG
GGTCAGAGACCAACCAGCCTGAGACATGTGATCATTCCTTGCTATGTTAC
CCCATAGCAACTTGTGTTCTCTGAGCCTAGTGCCCATCTGCAGAGAAGCA
TTCCATTGGTTCCTTGGCTCGCCCCTGCCTG

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTCACTCCTCCTGCAGGTGAACATACC
TGGGTAGGGAACATGGACAGTGCAAATCACCTGCAAAGCAAGCACACCAT
AGATACCATCCCTGCTTCAGATTTCCTCCACCCCCTGAAGCCTCTTCCCT
CCTGTGAGGGAATCCCAAACTTAGATAAGTGGCCTTCTCTAACAGACACA
AACTGTCCAAAGGTCCAGATATGGAGTCAGGGCTCTGTCATGTCAGCTCT
GGCCTACCAAGTGGGTGATCTCTTTCGGATAACAGCATAGCACCCAAATA
CATGGCTAATGGAGCTTGAAGAGATGATCTGTCACCAGATGGCATGGGTA
TGGTTGGTTTCACTTCCTTCCTGACTCTTCCTTTCTAGGGTCAAGCCTAG
GAAGGCAGAGGTTCCAGACTGGTGAGGCCAGGTGGATCACAGATGTGATC
ACCTGGCTGAGTTGGTGCAAGGATTCATCCTGTCCAGGTGGAAGAGGGTG
TCATACTAGGGGCAGCATCTGAGCCTATTTCTCCATCTGCCACAACTTTA
AACCATGCTGGTGAAAGACTATGACTACTACCCCTGTCCCTTGACTATAG
CATGTCAAGAGCGAGATATTGTTTGCAACATTATCGCAAATTCTCTATTT
TGCCCCATTAAGCATAATGATTCTTGTTTAAACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no183_m04.b1 MSMg01no183_m04.b1 CHROMAT_FILE:
MSMg01no183_m04.b1 PHD_FILE: MSMg01no183_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:52 2005
         (541 letters)



>mm_chr15_87278402_87279342
          Length = 941

 Score =  969 bits (501), Expect = 0.0
 Identities = 528/537 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctcctatttacccaaatatgtttgtctgccatgaaatgcccgtgggctgggagct 64
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaattctcttatttacccaaatatgtttgtctgccatgaaatgcccgtgggctgggagct 682

                                                                       
Query: 65  aaggcacaccatgcgcacaatccctgtctgcagggagctgagactctcagagggagactc 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaggcacaccatgagcacaatccctgtctgcagggagctgagactctcagagggagactc 622

                                                                       
Query: 125 tagctgacactctgactatgggaaagatgcatgggcttagggccagcatcagtgagtggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagctgacactctgactatgggaaagatgcatgggcttagggccagcatcagtgagtggg 562

                                                                       
Query: 185 agctggtgcctagtgcctcgtctgtgggatgactcttaatagaacacaatgcacgggcaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctggtgcctagtgcctcgtctgtgggatgactcttaatagaacacaatgcacgggcaa 502

                                                                       
Query: 245 tgccaagaaaagaggcagggtggtgtcaaggcagctgagggtgtctgtggcatcattatc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgccaagaaaagaggcagggtggtgtcaaggcagctgagggtgtctgtggcatcattatc 442

                                                                       
Query: 305 tatgggtcaggattcagagtgagtccaggcttctctggattctatttcctcctctgggaa 364
           |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 441 tatgggtcaggattcagagtgagtccgggcctctctggattctatttcctcctctgggaa 382

                                                                       
Query: 365 tgatgaggagttagacctgagtcctctcttatacatttgaggaaatcgttgccctatttc 424
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 tgatgaggagttagacctgagtcctctcttatacattcgaggaaatcgttgccctatttc 322

                                                                       
Query: 425 tcagacccagactctatggcagggctgtttcataacccaagaagggtacagtccaggccc 484
           |||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||
Sbjct: 321 tcagacccagactctatggcagagctgtttcataacccaggaaaggtacagtccaggccc 262

                                                                    
Query: 485 tgctcaactttctcagtacaaatgagctttctgggctgtggcagcagttcagatgag 541
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 tgctcaactttctcagtacaaatgagctttccgggctgtggcagcagttcagatgag 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no183_m04.g1 MSMg01no183_m04.g1 CHROMAT_FILE:
MSMg01no183_m04.g1 PHD_FILE: MSMg01no183_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:57:52 2005
         (463 letters)



>mm_chr15_87131511_87132373
          Length = 863

 Score =  864 bits (447), Expect = 0.0
 Identities = 459/463 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcactcctcctgcaggtgaacatacctgggtagggaacatggacagtgcaaatcacct 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcactcctccggcaggtgaacatacctgggtagggaacatggacagtgcaaatcacct 260

                                                                       
Query: 61  gcaaagcaagcacaccatagataccatccctgcttcagatttcctccaccccctgaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcaaagcaagcacaccatagataccatccctgcttcagatttcctccaccccctgaagcc 320

                                                                       
Query: 121 tcttccctcctgtgagggaatcccaaacttagataagtggccttctctaacagacacaaa 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 321 tcttccctcctgtgagggaatcccaaacttagttaagtggccttctctaacagacacaaa 380

                                                                       
Query: 181 ctgtccaaaggtccagatatggagtcagggctctgtcatgtcagctctggcctaccaagt 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtccaaaggtccagatatggaatcagggctctgtcatgtcagctctggcctaccaagt 440

                                                                       
Query: 241 gggtgatctctttcggataacagcatagcacccaaatacatggctaatggagcttgaaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtgatctctttcggataacagcatagcacccaaatacatggctaatggagcttgaaga 500

                                                                       
Query: 301 gatgatctgtcaccagatggcatgggtatggttggtttcacttccttcctgactcttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatgatctgtcaccagatggcatgggtatggttggtttcacttccttcctgactcttcct 560

                                                                       
Query: 361 ttctagggtcaagcctaggaaggcagaggttccagactggtgaggccaggtggatcacag 420
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctagggtcaggcctaggaaggcagaggttccagactggtgaggccaggtggatcacag 620

                                                      
Query: 421 atgtgatcacctggctgagttggtgcaaggattcatcctgtcc 463
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atgtgatcacctggctgagttggtgcaaggattcatcctgtcc 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 463
Length of database: 863
Length adjustment: 10
Effective length of query: 453
Effective length of database: 853
Effective search space:   386409
Effective search space used:   386409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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