BAC Information

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BAC

Clone NameMSMg01-184H16
Chromosome15 (Build37)
Map Location 95,956,479 - 95,956,787
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043315, Nell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik
Downstream geneLOC100043335, EG667869, LOC667874, LOC667894, Arid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184H16.T7 (MSMg01no184_h16.b1)MSMg01-184H16.TJ (MSMg01no184_h16.g1)
ACCAG376751AG376752
length749759
length of high quality
(start - end)
312 (58 - 369)281 (73 - 353)
definitionCHROMAT_FILE: MSMg01no184_h16.b1 PHD_FILE: MSMg01no184_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:52 2005CHROMAT_FILE: MSMg01no184_h16.g1 PHD_FILE: MSMg01no184_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGTTTGTACAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTCAAACACAGCAAACAGAGTCTGCTGGTAAAGA
AAGGCTGTTGTTGGAGGCGAGGAAACACACACGTATTGCAAGGTACATAC
ACAGAGAGACCTCCTATGAAGTAAATGGAGAAATAGGGTCTCTCTTTGAG
GATTGAAAGTTTTAAGGACATTTGAGAGGGCTCTTCTTTCTCCGGTTTAG
GATTGGTCAGTTGAACAAAGCAAGAAAGGCTGATAGGTCTACAAATTTGG
GGTAAAAATGTCCTGGTCTGGCCTTGAATTTTTCAGATGGGTCCACAGAC
AAGGGAACCCTGCTAATGATTTTATAAAACCCGCCCGGCCTTTGTTTTAA
GCAGCTAGACTTATATCTCAGGTCACGACGGTGAGGAAGAAGCCAGCCAT
CTTAGAATTTTACTACCACTAGTATCTAGTCATGGCCCTCTTTGCTCTCT
GTCTGCCTATCAGGGAATCTCTCTAACTCCTCACCCCTTACTTCCAACAC
AGGATTGCTGGAATAGTCAATTCTCAGTAGACCGAAGTTCTCGAACCATC
CACACAGGCATTACTTGGGACCTTCTCAGGAATGCAAAGTCCACCCCATT
ACTGAATCATTATCTATATTTAAAAATGTCCCAGATGAATCGAGTGTGGT
CACACATGTCTTCATTCCCAACTCTTGTGAGGCAGAGGTAAGAAGATTT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATGTTAAAAAGATCTGGAGAGTCTAGGG
ACAGAAGAAACATATCAATATAATTAAGTCCCTATTTGTATATTTGATAG
AGCTACAGCCAAGTTTATTCTAACGAGAAAAACCTCCGAGCACTTCCACT
AAATTTAGGGGAAAGATAAGGGCGTCCAATTTCTCAACTCAAACTCAACA
TGAAGTCTTAGCTTGAGCAGTAAGATAAGGAAAGAAGATGCATAGAGTTA
GAGAGAAAGTTGTGTCCTTATTTATAACCGATATAATTCCTTATATAAGA
GACCATTTTATTTCTACCCCCCCCCCTTTAGAGCTGATGAACAATTTTAG
CAAAGTGCCGCCCACCCTTAATATAGCACACACAACTCAGTAGCTTCTAA
TTTATCAACAACATACTTATTGATAAAGATAGCAAGGAAACAGACCCATC
CATATAGTCACAAAATAAAAACAGACTGCTCTGGATTAAACATAGCCTAG
GATGTGAAAGACTTCATGCTTACTAACAGGATTTGCTTAACATCAACAAC
TATTGTTGAATACACCATTAACATTAGACCTATGACTTAAAAGGACTTGA
AGTGTAATGCTTCCTCATTGAGCCCTAGCTTGTCTAGTACCCAGAATGCT
ATGTAAGCTTGCCAGGTAGAATATAACGGGTCATTGACTGGTCTGCCCAG
AAATTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_h16.b1 MSMg01no184_h16.b1 CHROMAT_FILE:
MSMg01no184_h16.b1 PHD_FILE: MSMg01no184_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:52 2005
         (312 letters)



>mm_chr15_95956276_95956987
          Length = 712

 Score =  551 bits (285), Expect = e-161
 Identities = 303/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctcaaacacagcaaacagagtctgctggtaaagaaaggctgttgttggaggcga 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 512 ggaattctcaaacacaacaaacagagtctgctggtaaagaaaggctgttgttggaggtga 453

                                                                       
Query: 64  ggaaacacacacgtattgcaaggtacatacacagagagacctcctatgaagtaaatggag 123
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 452 ggaaacacacacgtattgcaaggtacatacagagagagacctcctatgaagtaaatggag 393

                                                                       
Query: 124 aaatagggtctctctttgaggattgaaagttttaaggacatttgagagggctcttctttc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 aaatagggtctctctttgaggattgaaagttttaaggacatttgagagggctcttctttc 333

                                                                       
Query: 184 tccggtttaggattggtcagttgaacaaagcaagaaaggctgataggtctacaaatttgg 243
           ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 332 tccagtttaggattggtcagttgaacaaagcaagaaaggctgataggtttacaaatttgg 273

                                                                       
Query: 244 ggtaaaaatgtcctggtctggccttgaatttttcagatgggtccacagacaagggaaccc 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 272 ggtaaaaatgtcctggtctggccttgaatttttcagatgggtccacagacaaggaaaccc 213

                    
Query: 304 tgctaatga 312
           |||||||||
Sbjct: 212 tgctaatga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space:   213009
Effective search space used:   213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)