BAC Information

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BAC

Clone NameMSMg01-184I11
Chromosome15 (Build37)
Map Location 77,166,185 - 77,166,460
singlet/doubletsinglet
Overlap genenone
Upstream geneCyc1, Sharpin, Maf1, EG626280, Brp16, Tssk5, Bop1, Scx, Hsf1, Dgat1, Scrt1, LOC666497, EG666504, Fbxl6, Gpr172b, Adck5, Cpsf1, Slc39a4, Vps28, Nfkbil2, Cyhr1, Kifc2, Foxh1, Ppp1r16a, Gpt1, Mfsd3, Recql4, Lrrc14, Lrrc24, C030006K11Rik, D15Wsu169e, Zfp251, Zfp7, Commd5, Rpl8, Zfp647, 1110038F14Rik, Mb, Apol6, Rbm9
Downstream geneLOC100042318, Apol3, BC020489, BC085284, LOC624454, EG666639, 9030421J09Rik, EG626615, 2210421G13Rik, 9130218O11Rik, LOC666661, A330102K04Rik, EG545115, LOC666348, LOC666679, 2310016F22Rik, Apol2, Myh9, Txn2, Foxred2, Eif3s7, Cacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-184I11.T7 (MSMg01no184_i11.b1)MSMg01-184I11.TJ (MSMg01no184_i11.g1)
ACCAG376788AG376789
length1,236692
length of high quality
(start - end)
420 (29 - 448)276 (57 - 332)
definitionCHROMAT_FILE: MSMg01no184_i11.b1 PHD_FILE: MSMg01no184_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:56 2005CHROMAT_FILE: MSMg01no184_i11.g1 PHD_FILE: MSMg01no184_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:58:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGCTATGTGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCC
AGGAGACTAAGGCAAGGAGATCTCTGAGTTCAAGGTCATCTGGGACAAAG
CAAGTCCCCCAGGCGTGGTGGTACACTCCTTTAATCTGGGTCACATCTTC
TGCTGGAGACCTACATGAGGACATTATAAGAGGGAAGATTCTCTCTTCTT
TGCTTGCTTGCCTTGTGGGACTGAGCAACTGCTAGATCCTTGAACTTCCC
ACTCACAGCTGACCAATGTTGGGGAGTTGGACTACAGACTGTAAGTCATC
AACAAATTCCCTTTCTATATAGAGACTACCCGTAAGTTCTGTGACTCTAG
AGAACCCTGACTAATACACCAGAGGGAGGACAGGTCAGGACAGTGAGTGA
TGACTTTTCAGTAAGAGAACTTTGTAGTGAGAGAATCCAATACAGGGTAT
TTTTTTTCCCCCCCCCCGTAAGTTAGGAGTTGGGGAAAAAAGAGGGAGGA
ATAGACTGTGAGGGGACCCCAGAGTGTGTCCATTAGGTTGTGAGCAAAGA
GGCTTCAGTAAGAGTAGACAAGGAAGACAGCTGTGCATGCCCCTGTGTAG
ACTCTTGGAGAGGAGGCGACAGGGGCAAAGGTCATTCTAGGAAGTGTTTA
TGTGTTTGTAAGTATAATATAGTTAAGGTTCTGTTATATTTTCTTACTTG
TATAGTTGGCTCTTTTTTTCCTATGCTTTTATTTTTAATTTTTTTCATTC
TTTTGTTTTATAATTTCCTTTATTTTACTTTTTTTCTTCCTTACTTTTCT
TTTTTCTAACTTTTTTTTTTTCATTTACCTTCTATTTTTTCTCCTCTTCT
TTTCTATTATCTCTTTTTTTCTCTCCTTATTAATATTTTCCTTTTATTTA
CTTCTCCTTTTCATTCTCGTATCTTTTCTTTTTTTACTTATTTTTATTTA
TTATTATTTATTCTTTTTCTCTTCTATTTTATTCTCTTTCTTTCTCTTTT
TACTTTTTTTATTCCTTTTTCGTTTTTTCTATTCTTTTTTTCCATTTATT
CTCTTTTTATCTATTTTCAAATCTTTTCATTACTATTTTATTTTCTTTTC
TTTCTTATTTCTATTTTTTTCTTTTATAGCTTCTATTTTTTTCTTTGTCA
TTTCTCTTCTTCTTTCTTTTTTATATTCATCTTTTCTATTTTGCTTACTC
TTTATATATTTCCTCTTATACTTTTTCTTTATTATA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCTGGAACTGGAGTTAAACATGGTTGTGAGGCCTCACATGGGTG
CTGGGAGCTGAACTCAGGTCCTCTGCAAGAGCAAGCCCATCTTGTAACGA
GGAGAGACTGAGGGTCATGGAACTGGCATTATTCAAGGTCACGAAGGCAC
TCGTAGAAACAGGATTGGAGACCTGGTTTCATTCCTGCTTGCTTCCAGGA
CTCCGGTTCCATTCCTGATCCTGGCCTGCTTCTTTTCTAGCTAGGAAGAG
ACCTCTGGAGGATTTGTGTGTGCGAGGTTCCCATTGTTTTTAACACTCCC
GCACGAGAGCGGCCTCATCTGCGCCCACGCAGGGCTGAGTCCAAGGGTAC
CAGCTTTGGTTCAGGCGCCTGGCTGGGGAGTCTTAACCAAAGCTCCTTTG
CTTCAGCCTCTTCCTTCCTTTAGCCTGCTGTGCCAAAGGTCAGCCACTGA
AGCATCTAACAACGACCTGCATGCTCCCACCGCCTACAGACTCTGAAAGA
CCCCCTGTCTGTCCTGCATCACCGTGTGGTCTGCTGAGTTAAAGGAACGC
TCCTGGGTTACAGCAGGGAAAAGGCAACAGACACATTCAAATAGATTAAA
AACGTAAGCCTGGGTCATCCAGGGACCTAAGAGAAACCAGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no184_i11.g1 MSMg01no184_i11.g1 CHROMAT_FILE:
MSMg01no184_i11.g1 PHD_FILE: MSMg01no184_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:58:56 2005
         (276 letters)



>mm_chr15_77165985_77166660
          Length = 676

 Score =  534 bits (276), Expect = e-156
 Identities = 276/276 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctggaactggagttaaacatggttgtgaggcctcacatgggtgctgggagctgaactca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctggaactggagttaaacatggttgtgaggcctcacatgggtgctgggagctgaactca 260

                                                                       
Query: 61  ggtcctctgcaagagcaagcccatcttgtaacgaggagagactgagggtcatggaactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggtcctctgcaagagcaagcccatcttgtaacgaggagagactgagggtcatggaactgg 320

                                                                       
Query: 121 cattattcaaggtcacgaaggcactcgtagaaacaggattggagacctggtttcattcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cattattcaaggtcacgaaggcactcgtagaaacaggattggagacctggtttcattcct 380

                                                                       
Query: 181 gcttgcttccaggactccggttccattcctgatcctggcctgcttcttttctagctagga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcttgcttccaggactccggttccattcctgatcctggcctgcttcttttctagctagga 440

                                               
Query: 241 agagacctctggaggatttgtgtgtgcgaggttccc 276
           ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agagacctctggaggatttgtgtgtgcgaggttccc 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)