BAC Information

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BAC

Clone NameMSMg01-185N22
Chromosome15 (Build37)
Map Location 53,886,541 - 53,886,828
singlet/doubletsinglet
Overlap geneEG621631
Upstream geneExt1, Samd12, EG665097
Downstream geneTnfrsf11b, LOC665280, EG383032, Colec10, Mal2, Nov, LOC665302, LOC100039816, Enpp2, LOC100039911, LOC100039822, Taf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-185N22.T7 (MSMg01no185_n22.b1)MSMg01-185N22.TJ (MSMg01no185_n22.g1)
ACCAG377726AG377727
length765739
length of high quality
(start - end)		---288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no185_n22.b1 PHD_FILE: MSMg01no185_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:41 2005CHROMAT_FILE: MSMg01no185_n22.g1 PHD_FILE: MSMg01no185_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:00:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTAAATCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATTTGTTGTCG
TGAGTCGCGCATACCCTGTCTCTTTTAACCCCTXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTGTTTTTTTTACCCCCCGCCCCTGTCTTT
TGTTTCACTAGAGCATATTTGTTCCAACCCGCCCACTGAAAAAGACACAT
AAGGTAATGTGATTAGACTGGATCCTATCACAGCAGATTTCCACGGACCA
ATCGATGAAAGGCCTCATCTGCTCTACTTAAGAACTGTAGGATTGCTCTT
GGGATAAATCATAGTTCTGGTGATTTCTGACAGTTCCGTTACACGTTATC
ACTTTCATGTATGCCGTTAAAGCTACAGTGTCTCCGTAATAAATCTGTCA
TAGTGTATCACCCTATGTATGTATCTGACTGACATTTAAAACATCTTGAT
CGTCAAATCTTATTGCAAACTTTCTGACTTGTCTTTGGAGATAATCAGGT
TGTTTAGTTTGTCTT

CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTAGGAAACAAATTATTGAACTTTG
GAAGAGCAGTATGCTCTCTTAACTGCTGGGTCATTTTTTTTCTGACCCCT
GATACTTTTCTAAGTATTAAGGAAACTTAAGATACTGAAGTCACCTGAAT
CAGACTGAATGATGTCCAGACATATACTCATAGGATGTATGTAAATGGCC
TTTTTTCTGAATAATGAATGTCTGAAGTTGTAGTTTGGCTAAGAGGAGAG
GCACAGAGGAGAAAGATCCAGAAGGCCAGTAGAAGGAATGAAAATCTGCA
GCTGCAATGATTTGGTTTGTGTACCACGCAATCTCTAGGACATCCCAGAG
ATCTGGAATGGGGGAGACTTCCACAACTCAAAGCTGGTGATCTTATCCAA
GATGCCTAACAATGAGGATTTGGAACATGAAGAGGTCATCTCCTGTAGCT
ACACAGGACCCTCAGTGGAGGGATAAGGACTACAATTTACCACAAATCTT
CCCACCTCCAAAATACCATGTCTAAAAGAAATTCTGGTAAAAAGATGGAT
TACAGACTGAAGTTATGGCCAACCATTATTATGCTCAACTTGATACCCAT
CCCTTGTTTAAGCGCCAATCCACTGATCTTTATTTCTGATGGTCCGTTTA
AACTTGCCAAACATGGCGCCTTTATGATTGGCTCTCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no185_n22.g1 MSMg01no185_n22.g1 CHROMAT_FILE:
MSMg01no185_n22.g1 PHD_FILE: MSMg01no185_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:00:41 2005
         (288 letters)



>mm_chr15_53886341_53887028
          Length = 688

 Score =  542 bits (280), Expect = e-158
 Identities = 286/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taggaaacaaattattgaactttggaagagcagtatgctctcttaactgctgggtcattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggaaacaaattattgaactttggaagagcagtatgctctcttaactgctgggtcattt 260

                                                                       
Query: 61  tttttctgacccctgatacttttctaagtattaaggaaacttaagatactgaagtcacct 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttttctgactcctgatacttttctaagtattaaggaaacttaagatactgaagtcacct 320

                                                                       
Query: 121 gaatcagactgaatgatgtccagacatatactcataggatgtatgtaaatggcctttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaatcagactgaatgatgtccagacatatactcataggatgtatgtaaatggcctttttt 380

                                                                       
Query: 181 ctgaataatgaatgtctgaagttgtagtttggctaagaggagaggcacagaggagaaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaataatgaatgtctgaagttgtagtttggctaagaggagaggcacagaggagaaaga 440

                                                           
Query: 241 tccagaaggccagtagaaggaatgaaaatctgcagctgcaatgatttg 288
           ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tccagaaggccaggagaaggaatgaaaatctgcagctgcaatgatttg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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