CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTACTGAAGGTAGTTATTTGTGCATTTCCAGAATTAATAAACTTACA
GATATCCTTATTATCCAAGGATATGATCTAAAAGTATCCAAGCTTGGAAT
AGTATTGGTAGCCTTTATCAACTAAACCAGCCAATGTTTGACAGAAAAAT
TAGACAAACTTGAATAAATAATTATTGTAAATCATCTATTATATTATAAT
ATTATTAATGTCAATAATGGATGTTCATGAATCTAAATTCCTAAAGAATG
TATATTTTTTGCTTTATACTTATAGTAGCTATAACATGTACTAATAGCAC
TATATATAAAATCAGGCCATGATCTTTTATATGACTGCTTAAGATTAAAT
ATTATAAAAATAATTATATAAAATTGAATTTTCATCTACTCAATCACAGT
TTGACTTGATTTTAAATTAATCTCTGAGTCTAACTTTATTAAATTAGGGT
GATCTATGTTGCATCATGTAGTAGTCATGATTAATATTTCACATGAGAAT
CACAGAATACATTTTTATTTCTTCTAAATATTATATTGTTCAGTGTTGAA
AAAAACATTTAACCTATTTTTTCTGGTACATATGTTAAATAACATAATTT
TTTCCTATATAGTTCAAGATATTCTGAAACCATTAACTTTTCCGTGT

CATGAAGTGGAGGCGGGGCCGCCTGGCGCAXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTAACCTGATAAACAGCTTCAATGAAGTAGCTGGAT
ATAAAATTAACTCAAACAAGTCAATGGCCTTTCTGACACAAAGGAAAACA
GGCTAAAAAGAAATTAGGGAAACAACACCCTTCTCATAGTCACAAATAAT
ATAAAATACCTTGGCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGA
TAAGAACTTCAAGTCTCTGAAGAAGAAATTAAGGAAGATCTCAAGATGGA
AGATCTCCAGCTCTGGATTGGNAGNNNNNNNNNNNNNNNNNNNNNNNNNN
AAAAAAAAAAANNNNTNATAAAAAAAAAAAAGATTTTTTTATTTTTANNT
TATTATTTTTTAAATTTTTTAAAATAAAAATAAAAAAATNTNNNNAAAAA
ATTGGTGGGGATATANAACCCCNATCATCTCCCGTGGGGGACGCAAACAA
CCGTATTGTTCAAACCCCACAAAAAAACACCAAAGTATCACGTCCTTTAA
AACTATTTTTCCCCCCTTTTCCATATACGATCGAAACCCTAAGTAGAAGA

Query= MSMg01no187_c01.b1 MSMg01no187_c01.b1 CHROMAT_FILE:
MSMg01no187_c01.b1 PHD_FILE: MSMg01no187_c01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:02:20 2005
         (653 letters)



>mm_chr15_20414996_20416048
          Length = 1053

 Score = 1214 bits (628), Expect = 0.0
 Identities = 642/648 (99%), Gaps = 3/648 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctactgaaggtagttatttgtgcatttccagaattaataaacttacagatatcct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gaattctactgaaggtagttatttgtgcatttccagaattaataaacttacagatatcct 701

                                                                       
Query: 65  tattatccaaggatatgatctaaaagtatccaagcttggaatagtattggtagcctttat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 tattatccaaggatatgatctaaaagtatccaagcttggaatagtattggtagcctttat 641

                                                                       
Query: 125 caactaaaccagccaatgtttgacagaaaaattagacaaacttgaataaataattattgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 caactaaaccagccaatgtttgacagaaaaattagacaaacttgaataaataattattgt 581

                                                                       
Query: 185 aaatcatctattatattataatattattaatgtcaataatggatgttcatgaatctaaat 244
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 580 aaatcatctattatattataatattattaatgtcaataatggatggtcatgaatctaaat 521

                                                                       
Query: 245 tcctaaagaatgtatattttttgctttatacttatagtagctataacatgtactaatagc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tcctaaagaatgtatattttttgctttatacttatagtagctataacatgtactaatagc 461

                                                                       
Query: 305 actatatataaaatcaggccatgatcttttatatgactgcttaagattaaatattataaa 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 actatatataaaatcaggtcatgatcttttatatgactgcttaagattaaatattataaa 401

                                                                       
Query: 365 aataattatataaaattgaattttcatctactcaatcacagtttgacttgattttaaatt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 aataattatataaaattgaattttcatctactcaatcacagtttgacttgattttaaatt 341

                                                                       
Query: 425 aatc---tctgagtctaactttattaaattagggtgatctatgttgcatcatgtagtagt 481
           ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aatctcttctgagtctaactttattaaattagggtgatctatgttgcatcatgtagtagt 281

                                                                       
Query: 482 catgattaatatttcacatgagaatcacagaatacatttttatttcttctaaatattata 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 catgattaatatttcacatgagaatcacagaatacatttttatttcttctaaatattata 221

                                                                       
Query: 542 ttgttcagtgttgaaaaaaacatttaacctattttttctggtacatatgttaaataacat 601
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ttgttcagtgtttaaaaaaacatttaacctattttttctggtacatatgttaaataacat 161

                                                           
Query: 602 aattttttcctatatagttcaagatattctgaaaccattaacttttcc 649
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aattttttcctatatagttcaagatattctgaaaccattaacttttcc 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)