BAC Information

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BAC

Clone NameMSMg01-189C06
Chromosome15 (Build37)
Map Location 42,858,835 - 42,859,118
singlet/doubletsinglet
Overlap geneRspo2
Upstream geneLOC432947, LOC100039268, LOC100039197, Angpt1
Downstream geneLOC675960, Eif3s6, Ttc35, LOC100039288, Tmem74, LOC100039309
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-189C06.T7 (MSMg01no189_c06.b1)MSMg01-189C06.TJ (MSMg01no189_c06.g1)
ACCAG379928AG379929
length726727
length of high quality
(start - end)
336 (45 - 380)284 (79 - 362)
definitionCHROMAT_FILE: MSMg01no189_c06.b1 PHD_FILE: MSMg01no189_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:02 2005CHROMAT_FILE: MSMg01no189_c06.g1 PHD_FILE: MSMg01no189_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:05:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCCCCAGATTCAAAAAGGCATTGGTCTATTATCCTGTAATCCTACGA
CTGAATATACAGTCTAAGGAAATGAATTCAGTAAGCCAGAGCCACCACTT
CTCACTTGTCCTTTATATTACTAGTCACAATAGGAAGAAATGGCAACATT
TTAAGTGCCTGTGGACATAGGAAAAGAAAACAAAACAAAACAAAAGAGAG
AAAATGTGGGGCTCACACACACTAAAATACTGTAACCATAACAACAACAG
CAACAGCAACAACAACAACAAAAGAGTAAAAAGTGCCATTCTTTTTTTTC
CAATTTTTTATTAGATGTTTTCTTCATTTACCTCCCACATGCTATCCCAA
AAGTCTCCTATACCCACCCCCACCCTGCTCTCTTACCCACCCAACAATGA
ATTTATGAAAAAGTGCCATTCTTGAGAGTGTGGATGGTAGTGGGAATATT
ATGCTGAATACAGTAAGCCAGTCAACAAAAGACAAGAACCGTATGACTTC
ACTCATACGTGGGATCATAAATCCCACAGAAGTTGAGGCAGCACAGTGAT
TAGCAGAAACCGGTGTGAGTGTAGAGAACGGCGCCATAGGAAAATATTGG
CCCACATTTAAAATTTAGATGAGGAACTAATTTCTAGTGTCCCGATGAAT
GACAGGGGAAATATAGATCCATTGAT
TTTCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTATAATTTCTTTTTTAAT
ATTGTTTTATTATTTTAAGTTGAGCATTAAGTCAGTACAATCTACTGTGA
ACCACAAAGTATTTTTACTTAATTCACTCCTGTTTGTGGTCAGATTTTGG
CTTACTATCTTAATTGTTTGTATTTGCAATATATTTAATATCAGAAATGG
TACTGGCCCCAATCAAAACCAACCAACCAAGAGTTTTCGGAGGAAAACCA
TTATGGTTATCATTGGGTCCCCAAATTATTGTTAGTTAGACCTTGTCACC
AAAAACTAACCTTTTTTTTTCCCCCCCCCCCTCATAGTTTTAAGAAGTAT
CACTGAATAAGCCCACTATACGAAAAGAAAAAAAAAAATGTTGTAGGGGG
ATGACAAAGCCAAAGACTCTCTGATGTGGGTGATTTCATTGGAATAATTA
TTAGATAACTGACAAAAATTTAGCTGCCTTATAAGTATGATTCACTGTGC
ACAAATCTTGGCTTACCGAAATTAGTATGTGTCTCCCATAGAGGCTCACA
GCATTTATATCACACGTTCATATCTCTTGTAATTCTAGTCATATATGGTT
GCATGCTACGATGGGACTGAACCCACGTCCTCTGTATTGAGTTCCAGCCT
CTCTATTCACTGAGTCTACCCTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no189_c06.g1 MSMg01no189_c06.g1 CHROMAT_FILE:
MSMg01no189_c06.g1 PHD_FILE: MSMg01no189_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:05:02 2005
         (284 letters)



>mm_chr15_42858595_42859279
          Length = 685

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctataatttcttttttaatattgttttattattttaagttgagcattaagtcagtac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tttctataatttcttttttaatattgttttattattttaagttgagcattaagtcagtac 465

                                                                       
Query: 61  aatctactgtgaaccacaaagtatttttacttaattcactcctgtttgtggtcagatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 aatctactgtgaaccacaaagtatttttacttaattcactcctgtttgtggtcagatttt 405

                                                                       
Query: 121 ggcttactatcttaattgttt-gtatttgcaatatatttaatatcagaaatggtactggc 179
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ggcttactatcttaattctttggtatttgcaatatatttaatatcagaaatggtactggc 345

                                                                       
Query: 180 cccaatcaaaaccaaccaaccaagagttttcggaggaaaaccattatggttatcattggg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 cccaatcaaaaccaaccaaccaagagttttcggaggaaaaccattatggttatcattggg 285

                                                       
Query: 240 tccccaaattattgttagttagaccttgtcaccaaaaactaacc 283
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tccccaaattattgttagttagaccttgtcaccaaaaactaacc 241


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 685
Length adjustment: 9
Effective length of query: 275
Effective length of database: 676
Effective search space:   185900
Effective search space used:   185900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)