BAC Information

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BAC

Clone NameMSMg01-190F07
Chromosome15 (Build37)
Map Location 71,386,557 - 71,386,868
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383051, 1700010C24Rik
Downstream geneLOC100040847, Col22a1, Kcnk9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-190F07.T7 (MSMg01no190_f07.b1)MSMg01-190F07.TJ (MSMg01no190_f07.g1)
ACCAG380715AG380716
length703997
length of high quality
(start - end)
319 (36 - 354)---
definitionCHROMAT_FILE: MSMg01no190_f07.b1 PHD_FILE: MSMg01no190_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:32 2005CHROMAT_FILE: MSMg01no190_f07.g1 PHD_FILE: MSMg01no190_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:06:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAACA
TCCCTATTGCATGAGAAAAAGAGTGGCTTCCAGGGTGTATTCTATTGCCT
TTCTGCCTAGCCAGCTAGCCATAGTCAAAGCACACCTTGCTATTAAGCCT
TATTATGGAAGGAATGAGACAAAATTGCACAGCATGGCACATGGATGGTT
AAATATCTTAAGGAATTCATGGCAACACAACTGCCAGAAGAGATGTCCAC
ATCACAAATACCCCTGTCAAACCTTTGCCTCTCTTCAGCTACAATGCAGT
TCTTACTGTCTCACACCTGATTCAGCTCTGCCTTGGGAATACTTATGTTG
TCTTTATTCTATGACTTTTCATTAAACCCATGTTAAAGTGCTTCATTGAT
AATACACTAAAATATGCCTGGCCCTTTTACATAAGATATCAATAATGGTA
CAGCAGCACCACCATCAAGCTTGTGAACTCTCAGTTACCTGACTTAGCGG
TTGAAGACTTTGAGCTGGGTGAATGGACTTTTAACACAGATGAATCCAGG
TTCTGATGGAAATATGACCTGCTTCTCAAATAGCCATGTCCCTTCATCTC
ATCATTTCCCAGTTTTAACTACATCAAAATTAGAACAAAAATATAGCATG
ATGAGTCTCTGTTCTCTCTTAAGTTTTTGAACAGCAAAGGGATGCCCAAG
ACN
GATTCGCCCCGTTTATTTAAAAAACTTNNCTCGCATNNAANNNTCGATGA
TATGAGTAGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCCCGAAAAATATATGCCTCTCATGTTAAAATCATCAGGCAA
CTGTAAGTGTGAAATAGTATTTTCTCCCCTCAACACCAACCCCATGAGAA
ACTTTTTAAAAAACCTAATTCATAAGCCAGTGTGCTTAAAAATTGCTGAG
TCTGGACTTTATAGCCCATTATACTTTAATCCGCGTTCTATAGAGTGTTT
CACGCTAAGAAACAAAAAGAGGGAGAACGGGAAAAGAGCGCTTTTGTCCA
AAGTTACGTTTTATCGGCCGGGGAATTGGGAATTGACGGCATGAAAGTTA
TTTGGTAGAGTATTGAAATAATCTAACCGGCCACATTGTGAAGCAAAGAC
ATTTTTTTATGGTAGTGATCCCTGCAGCTTTCAAACTGAATTGAAACGAC
TTGACAAAACGAATGCCGCGGGGAGCGCGAGACCACAAATAAAAGAGAAT
TTCATGGGATGGAGTAATAAATTGACCACACCAAAGGTTAACAATATTCA
GAACCAGAACATTCACGGAACAGGGCATAAGTCGATGATGATAGGGGACG
TCTAGTTTCCCCGTTGAAGCCATGTTTTTAGATATGGAGACTCGATTTTT
TACGAATAGTTATCCGATCAGCACGGCCCCAACCTTGTTAAATAACAGAT
AATGAGGGTGAATGAGGCGGACAAGAGATAAGGGAGCGGAGAGGAGATAT
GTTTAAAAAAAAACACTTGAGTTATATAACCAACAGAATTTCCTTAGGAG
GGCGATATTCAAACAGAGCGAGCGCAATAACACGCAGAACAACCGCAGAC
CTGGCGGATATAAATAGATTTCACGCTCATGGTGATACCAAGAATTAGTA
AACTGACGTTAGATGTGAGTGCGCTCCTGTTAATCTATATGTGTATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no190_f07.b1 MSMg01no190_f07.b1 CHROMAT_FILE:
MSMg01no190_f07.b1 PHD_FILE: MSMg01no190_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:06:32 2005
         (319 letters)



>mm_chr15_71386353_71387072
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%), Gaps = 1/312 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaa-catccctattgcatgagaaaaagagtggcttccagggtgtattctattgc 63
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaaacatccctattgcatgagaaaaagagtggcttccagggtgtattctattgc 264

                                                                       
Query: 64  ctttctgcctagccagctagccatagtcaaagcacaccttgctattaagccttattatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctttctgcctagccagctagccatagtcaaagcacaccttgctattaagccttattatgg 324

                                                                       
Query: 124 aaggaatgagacaaaattgcacagcatggcacatggatggttaaatatcttaaggaattc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaggaatgagacaaaattgcacagcatggcacatggatggttaaatatcttaaggaattc 384

                                                                       
Query: 184 atggcaacacaactgccagaagagatgtccacatcacaaatacccctgtcaaacctttgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atggcaacacaactgccagaagagatgtccacatcacaaatacccctgtcaaacctttgc 444

                                                                       
Query: 244 ctctcttcagctacaatgcagttcttactgtctcacacctgattcagctctgccttggga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctctcttcagctacaatgcagttcttactgtctcacacctgattcagctctgccttggga 504

                       
Query: 304 atacttatgttg 315
           ||||||||||||
Sbjct: 505 atacttatgttg 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space:   220410
Effective search space used:   220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)