BAC Information

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BAC

Clone NameMSMg01-191F21
Chromosome15 (Build37)
Map Location 87,852,903 - 87,853,208
singlet/doubletsinglet
Overlap genenone
Upstream geneAW049604, LOC100042329
Downstream geneLOC100042340, Zdhhc25, Brd1, Zbed4, Alg12, Creld2, Pim3, 1700019P01Rik, Mlc1, LOC667558, Mov10l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191F21.T7 (MSMg01no191_f21.b1)MSMg01-191F21.TJ (MSMg01no191_f21.g1)
ACCAG381409AG381410
length703734
length of high quality
(start - end)
310 (46 - 355)280 (76 - 355)
definitionCHROMAT_FILE: MSMg01no191_f21.b1 PHD_FILE: MSMg01no191_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:56 2005CHROMAT_FILE: MSMg01no191_f21.g1 PHD_FILE: MSMg01no191_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:07:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACAAAAGAGGCTATGGTATGGATGAACTTGAAACTGTCATTCATA
TTCCATTAGATGGTGTGGCAGCCAATAGCATTCTAGAACCACTTGTCCAT
GGTACCCAGGACAAGCAAACTCATGCATGACATAGAAAGTAGAAGGGGGT
CATTGCTGGTCCAAGTGCAGTGAGGGGTAACTAGTTAAGAGGTATGGGAA
GTTACTAGTTCACAGGTATAAGGGGTCCGTTTGGAAGAGAAAGAGGTGGG
TGGTAGAGATGGCCAAGCTTCACATAGGTTGACTGACATCTCTAAAGGCA
ACTGTTCTAGTTACTTCCNTGACGANGCCCCGACTATAACATGACCACAG
TAACTTGAAGAAGAAAGGCAAAAAAAAAACTTTGCAGATTATAGGCCATC
CATAAGGAAGGGCAGGTCAGGAACCCGGAGGCAGGAACTGAAGCAGAAGC
CATGGAGGAACACTGCTCACTGGATTCCTCTTCTTGGCTTGCTCAGGTTG
CTTTCTTAAACCACCCAGGACCACCTGCCCAAGGAGGGCACTACCCAGAG
TGGCTCAGTTCATCTCATGCTAGTCTATATCCTATAACACGCCCCCAAAT
TGGACTATTATGATGAAGACACTACCTATGTTGATTTCCTTCCTTCCCAA
TGT
CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGGGTTGCTTGCATATATGCA
CAGGGGAGGTTAGTTACTGGGGCACAGAGGACTTATCAGTGGCTACACCA
CAGAAGAAAATGACTCCCCATCCTCCCAGCATCCATTAACTGTTAGTGAA
CCCTGAGGGAGGGTCCCTCCTCTATGCTTCATGAAAGGTTCGTGGAACCC
CATCTTGTGCAGATAACACAGCTGCAGTGAGCTCATGAATGTATGGCCAT
GTCATGTTTGAGAGGTGCCTCTTGACAGACAGGGTTAGTTGTCTTCTCCC
TTAGGCTTAATCTTCACCGGCATGCCCTAGGGCTGTGGCCAGAACTACCA
GCCTCTTGCTTGTGTGTAAAAGAAAATTTCTTGGAGCACCGTTGGCTAGA
GTAGCATCCTTTCTCATTAACTTGTCTTTGTGCCTTTGTTAAGAACTCCC
CTAATGACATGCTTTGGGTCAGTTTCTATGCTGTGCCTTCGGGTTTCCTA
ACTGGCCTGTATCTCTCTTTCTGCCAGTACTTCCCAGATGCTTGAATCTT
GAGAATAGTTTCCTGCGAATCCTGGCACTTTGTTCTCCTTTCTCTCAGCT
GTTTTGGTTCACAGGATTATCTTGCATTCCACACTCGCTTTAAAAACAGC
TGTGAATTTCTGCTGAAATACTTTTGAGATATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_f21.b1 MSMg01no191_f21.b1 CHROMAT_FILE:
MSMg01no191_f21.b1 PHD_FILE: MSMg01no191_f21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:07:56 2005
         (310 letters)



>mm_chr15_87852699_87853408
          Length = 710

 Score =  561 bits (290), Expect = e-164
 Identities = 302/306 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacaaaagaggctatggtatggatgaacttgaaactgtcattcatattccattag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcacaaaagaggctatggtatggatgaacttgaaactgtcattcatattccattag 451

                                                                       
Query: 65  atggtgtggcagccaatagcattctagaaccacttgtccatggtacccaggacaagcaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atggtgtggcagccaatagcattctagaaccacttgtccatggtacccaggacaagcaaa 391

                                                                       
Query: 125 ctcatgcatgacatagaaagtagaagggggtcattgctggtccaagtgcagtgaggggta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ctcatgcatgacatagaaagtagaagggggtcattgctggtccaagtgcagtgaggggta 331

                                                                       
Query: 185 actagttaagaggtatgggaagttactagttcacaggtataaggggtccgtttggaagag 244
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 330 actagttaagaggtatgggaagttactagttcacaggtataagaggtccgtttggaagag 271

                                                                       
Query: 245 aaagaggtgggtggtagagatggccaagcttcacataggttgactgacatctctaaaggc 304
           ||||||||||||||| |||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 270 aaagaggtgggtggtggagatggccaagcgacacataggttgactgacatctctaaaggc 211

                 
Query: 305 aactgt 310
           ||||||
Sbjct: 210 aactgt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)