BAC Information

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BAC

Clone NameMSMg01-191P02
Chromosome15 (Build37)
Map Location 101,998,247 - 101,998,863
singlet/doubletsinglet
Overlap genenone
Upstream geneAcvr1b, Grasp, Nr4a1, 9430023L20Rik, 6030408B16Rik, Krt80, Krt7, Krt85, Krt83, 1700011A15Rik, 5430421N21Rik, EG574415, Krt84, Krt82, 4732456N10Rik, Krt75, EG432985, EG432986, EG406223, EG432987, Krt6b, Krt6a, Krt5, Krt71, Krt74, Krt72, Krt73, Krt2, LOC100043001, Krt1, Krt77, Krt76, Krt4, Krt79, Krt78, Krt8, Krt18, LOC676882, Eif4b, Tenc1, Spryd3, Igfbp6, Soat2
Downstream geneCsad, Zfp740, Itgb7, Rarg, D15Mgi27, Espl1, Pfdn5, Myg1, Aaas, Sp7, Sp1, Amhr2, Prr13, Pcbp2, Map3k12, Tarbp2, Npff, Atf7, LOC100043600, Atp5g2, Calcoco1, LOC637762, LOC100043050, Hoxc13, Hoxc12, Hoxc11, Hoxc10, Hoxc9, LOC100043060, Hoxc8, Hoxc6, Hoxc5, Hoxc4, LOC432989, Smug1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-191P02.T7 (MSMg01no191_p02.b1)MSMg01-191P02.TJ (MSMg01no191_p02.g1)
ACCAG381782AG381783
length737903
length of high quality
(start - end)		683 (45 - 727)---
definitionCHROMAT_FILE: MSMg01no191_p02.b1 PHD_FILE: MSMg01no191_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:44 2005CHROMAT_FILE: MSMg01no191_p02.g1 PHD_FILE: MSMg01no191_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:08:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACTTTTTAAGGAGTGTGCAGAGCTGGCCAAAGCTGCGGATCTAGAG
GCTGCACCTATTGCTTTTGAGGCTGGAGGGACGGCTCAGTGGCGAAGAGT
ACTTGCCACAGAGCCACCTAATTCAGATCCCAGTACCACAAATCCAGCCA
GGTGTGGTCCATCGTGCATGCCTGAAACCCCATGAGACAGAGAATCACCA
GGGCTGGCTTGGCTTAGCGGAGAACAAAAACCTCAGTCCAGATATTTTTA
TAGTAAGTGGTGGCAGATGTGCATTATAGGATATGGAATTGGTTCTTTTT
GCTGTGTCCATCTCAGGGATTAACCTAAGGTTGCCAGGCTTGGCAGCAAG
TGCTCCTCAGACCAGAGCAATCCTGCCAGTACCCAGGTTGCTTTTTGTTT
CTCTTTGCTGTTTGATAAGGATATTATTTCAATGCCAGGCCTGCATTGCC
TCCTGGTTTCATGGTAGGTCCTTCTGTTGACTTCTGGTTCTGAGGCTCAT
AGACTATAGAACTGGGTTGCATGGAGCAAGGCTTCCTCCAACAGCACACA
GACAGCACATGCATGCACGCACGCACGCGCACACACATACACACACACAC
ATACACACACACACACACACACATACACACACACACACACACACTAATCT
CCCATCTCTACATCTTTCTCTCCAAACCCTCTTCCCC

NNNNCCCCCCTTTTTTTTNTTTAATTCATCTTAATGGATGNNGGGGGGGG
AGGGGGGGGAGGGAGGGGGAGNGAGGAGAAGAAAGCAGGTGGAACAAAGA
AGGAGAGGAGAAAGACAGGAGGAGGAAGAGGAAAAAGAGGGAGGGCGAGG
GTTTTAGTGGAAAAAAGGGGGNGGAGGAGGGGGGGAGAGGAGAAAAAGGA
GAGAGATAAAAGGAAAAGGGGGAAGAAGGAGAAGAGAGAGAAAGGGGAGG
GGGAGGGAGGGGAGAGAGGGAGGAGGGAGGGAGGGGGGGGAGGGAGGGAG
GGGGGAAGGGGGGGGGGGGGGAGAGGGGGGGAGAGGAGGGGGGGGGAAGG
AGAAGGGGGGGGGGAAAAAGAGGTTGTGAGAGGGGAGAGGAGAGGGAGGA
GGNGAGAAAGAAGGATTAAATTAAANATGCGGGAGACGGNGGCGGAAGAG
GAGGGAGGAGGGGGGGGGGGGGGGGGGGGGNNNCNAAAAAAAAGGGAGGG
GAAAAAAGGGGGGNNNGGGGNNNGGGGGNNNTNNNNNNNGNGNGGGGGGG
GGGGNGGNGGGGGGGGGGAGGAGGGGGGGTNNGGGGGGGGGGGGAAAGGA
GGGGAAAGGGAAAAAAGGAGGGGAGGAAAAGGAAGAGAAGGAGGAAGAGA
GGGAAGAGGGAGGGGTGAAGGGGGGAGAGGGAGAAGAGGAGAGAAAAGAG
GAGGGATGAAAGAGAGGGGGAGGAGAGGAGAGAGGGGGGGGGGGGGGGAG
GAGGAGAGAGGAGAGAGGAGAGAAGAAAGAGGAGGGGAGAGGGGGGGAGG
GGAAGAGGGGGAAGGAGAAGAGAGTTGAAGAAGGGAGAAGAAGTGATATA
GGAGAGGGAGAGGGGGAGAGAGAGGGGGGGAAGGAGAAGGAGAGAGAAAT
ATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no191_p02.b1 MSMg01no191_p02.b1 CHROMAT_FILE:
MSMg01no191_p02.b1 PHD_FILE: MSMg01no191_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:08:44 2005
         (683 letters)



>mm_chr15_101998042_101999124
          Length = 1083

 Score = 1019 bits (527), Expect = 0.0
 Identities = 612/679 (90%), Gaps = 62/679 (9%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactttttaaggagtgtgcagagctggccaaagctgcggatctagaggctgcacc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcactttttaaggagtgtgcagagctggccaaagctgcggatctagaggctgcacc 265

                                                                       
Query: 65  tattgcttttgaggctggagggacggctcagtggcgaagagtacttgccacagagccacc 124
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 266 tattgcttttgaggctggagggacggctcagtggtgaagagtacttgccacagagccacc 325

                                                                       
Query: 125 taattcagatcccagtaccacaaatccagccaggtgtggtccatcgtgcatgcctgaaac 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 taattcagatcccagtac-acaaatccagccaggtgtggtccatcgtgcatgcctgaaac 384

                                                                       
Query: 185 cccatgagacagagaatcaccagggctggcttggcttagcggagaacaaaaacctcagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccatgagacagagaatcaccagggctggcttggcttagcggagaacaaaaacctcagtc 444

                                                                       
Query: 245 cagatatttttatagtaagtggtggcagatgtgcattataggatatggaattggttcttt 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagatatttttatagtaagtggtagcagatgtgcattataggatatggaattggttcttt 504

                                                                       
Query: 305 ttgctgtgtccatctcagggattaacctaaggttgccaggcttggcagcaagtgctcctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 505 ttgctgtgtccatctcagggattaacctaaggttgccaggcttggcagcaagtgctcctt 564

                                                                       
Query: 365 agaccagagcaatcctgccagtacccaggttgctttttgtttctctttgctgtttgataa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaccagagcaatcctgccagtacccaggttgctttttgtttctctttgctgtttgataa 624

                                                                       
Query: 425 ggatattatttcaatgccaggcctgcattgcctcctggtttcatggtaggtccttctgtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggatattatttcaatgccaggcctgcattgcctcctggtttcatggtaggtccttctgtt 684

                                                                       
Query: 485 gacttctggttctgaggctcatagactatagaactgggttgcatggagcaaggcttcctc 544
                      ||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 685 -----------ctgagactcatagactatagaactgggttgcatggaacaaggcttcctc 733

                                                                       
Query: 545 caacagcacacagacagcacatgcatgcacgcacgcacgcgcacacacatacacacacac 604
           |||||||||||||||||||||||||                                   
Sbjct: 734 caacagcacacagacagcacatgca----------------------------------- 758

                                                                       
Query: 605 acatacacacacacacacacacacatacacacacacacacacacactaatctcccatctc 664
                ||||||||||||||||||||          |||||||||||||||||||||||||
Sbjct: 759 -----cacacacacacacacacaca----------cacacacacactaatctcccatctc 803

                              
Query: 665 tacatctttctctccaaac 683
           |||||||||||||||||||
Sbjct: 804 tacatctttctctccaaac 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 59
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space:   722129
Effective search space used:   722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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