BAC Information

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BAC

Clone NameMSMg01-192H03
Chromosome15 (Build37)5 (Build37)
Map Location 60,853,104 - 60,853,29979,274,448 - 79,274,674
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040266, LOC623048, LOC211832, LOC623094, EG632412, LOC100040311, D330050I23Rik, 9930014A18Rik, A1bg
Downstream geneLOC100040323, Myc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192H03.T7 (MSMg01no192_h03.b1)MSMg01-192H03.TJ (MSMg01no192_h03.g1)
ACCAG382119AG382120
length1,2391,262
length of high quality
(start - end)
196 (499 - 694)228 (220 - 447)
definitionCHROMAT_FILE: MSMg01no192_h03.b1 PHD_FILE: MSMg01no192_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:49 2005CHROMAT_FILE: MSMg01no192_h03.g1 PHD_FILE: MSMg01no192_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:09:49 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(60,853,104 - 60,853,299)(79,274,448 - 79,274,674)
sequence
NNNGCGCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTTATCTTTCCTTATATTTCAATAGATCCAGACAAGAACTAGACCTG
GCACAGAGAACTATATCTGTGTTAGCGTGAATAGAACCATTAAGTGGAAC
TCATCTATTATTTGCATCTGAGTGCCTCCTGAGAAGTGCTGTGTCTGAAA
GTGGAGCTGTTTGTACTAAGCTTTCTCATTCCCAGTGAACTTCAGTTTTA
CAGCAGTGTTAACTGTGAAGCACAATTTGGAATTTAATTTGATAAAGAAG
CAATGATCATCACAAATTCAGGCTCTCCCTTTTCTTCTCTCCCTCTTTTC
TGTTCTCTTTCTATCTTACTGGAGCACTACCGGAGCAGCTAACTCTAGCA
TTTGCCATGGAAGTATGACAAAAATATAAAAGGCTTCTCTTGTCTTCTCT
TTTTATATCCCCCACTATATGCATGGAAATCAAAGGAGAAAAAATTAGCC
ACTAATAACTATGAGTCCACTGCTTTGTTAGTTGGTTTGCTGAAGTTTTA
GCCTAAGGTAGCAATTTCAAATAATGGATTTTTAAATTATATTTTATGAG
AATATTGTGTTTTACTCCACACTATTCTTCGTTTTTCACATCTGATATAT
AATACTAAAGCTATTTCTCTGAAGCACTTGTTAAGAAGCACAAATGTGTG
CATGGCTTCTCTTGTCCTATTTTTCTAGGAAAGTTCACCTTTCTCTTTTT
TTGTCTCTCTGTTTCTGACTCTGTCTATTTCTGTCTCTCTGACTCTGTCT
TCTCTGAATCTGTTTTTCTTTATCTGACTGTCCGTCTGTCTGTTTGTCTG
TTTCTCTCTCTTCCCCTTGACATCTTTTGTTAAATTTTCCTTTCTTTTTT
TACTCTCTCTTCTTCCTTTTTTTTTCACTATCTTCTCTTTATTTTTTCCC
TTTATTTCTCCTTTTATCTCTTCTTTCCCTATTTCTCCTTTCTCATTCTT
TCTTTCTCTATTCTCTCTCCTTTCCTTAATCCCTCTCATTCATTCTTCCT
TTTCTCTTCATCTATTTTTATCTTCCTCTCTCTTTCCATCCTCTTTTCTC
TTTTTTACTCTTCTCTCTCTTTTCACTTCTTTCTCTTTCCTTACTTCCTT
TATTTTTCCTCATTTTTTACTTTTCTTTTTCCTTTCTACTTCTTTCCTAC
TTCCCATCTACTTCTCTTTCTCTTATTATCTATTCTTCA
NNNTTTTCTGTGTAGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTGCAGGGATGTATTGAGGAAGAGTTCATG
CTTTCTTTTGAAGGGAACCTCTTATCCCTGTCTGAGAAATGACTTGGTGA
TGTCACCTGTGATGCAAAGCAAATAGGGAACTCTATGATGGGAGTGGGTG
GATAGGGCAGAATATTAGCAATTATCTCTAATCTTACTGTTATTGAAAAG
TGCTAATTAGTTAATGAGCATTGAAGTGCTTAACTATGTCTTACCCTTTT
AGAAGACTGAAAAAAATGGATGCCTGCTATTGTATTTTTCTATTAAGAAA
ACTAAAACAAAATAATTATTTTATAATGTTATAGCCTTTTGAGTCTAATT
GTAAAGACTGTTTTAGTGTAACTCTGATTATTACAATAAATATAGATTTT
TTTTTTTTCCCCCCCCCCAAAGAATCAGGGTCTTGCAAAAAAAAAGAGGA
GCTGTCNCNAAACACAAATCTAGTACATTTTATATTTCCTTATGCTTCTT
TCACACTTATGAAGAATGTGGATTCATTTGTTCCTTTCAAGTTTGGTGTT
TTATCAGTATTTATTACATCTACACACTTAAGTTTGCGGGCTCAAAGAGA
ATCTTTTTTTCAACAATATGGTTTTGCTTCTCTGCCAATAAAGAACAGAA
TTCATTCTTGTAAAGTAAGAACTCAATGTATGCTATTGGGCAATGTTTTT
GGGGCCTGGAAAGATGGGTTAAGAGCATTGACTGCTCTTCCAGAGTCCTG
ATTTCCATTCCCAACAACCACATGGTGGTTCACAACCTTCTATAACGAGA
TTCAACAACCTCTTCTGGAGCATCTGAAAACAGCTACCGTGGAATTTCTT
TATTTAACTTAGTAAATAAATTCTCCATAAACTATTAAAAACCAAAATTA
TTTTTTCTTTTAATGGGAAATATTTTTTTTTTTCTTTTTAACCGTAATTT
CCCTTTCTTAATTTTCCTCTTTTTAATACTTCTATTTAAACCTCCTTCCC
CCTGTTTTATAAAAGTGTTTTCTTTATCTCTCTTATAACACCGTCCCGTG
TTTAATTTTTTTAATTATCCTCCTCATACTACCCCTTCTTTTGTTTAATA
TGTGTCTCTTACGATTTCTCCAAATACATAATATACATCTTTATTGTGAT
TTTTTCTGTCTATTTTTTATTTTTTCTCTTCTCTTAGTATCTCATGCTTT
ATATTTCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_h03.b1 MSMg01no192_h03.b1 CHROMAT_FILE:
MSMg01no192_h03.b1 PHD_FILE: MSMg01no192_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:49 2005
         (196 letters)



>mm_chr15_60852904_60853499
          Length = 596

 Score =  379 bits (196), Expect = e-110
 Identities = 196/196 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccactaataactatgagtccactgctttgttagttggtttgctgaagttttagcctaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ccactaataactatgagtccactgctttgttagttggtttgctgaagttttagcctaagg 337

                                                                       
Query: 61  tagcaatttcaaataatggatttttaaattatattttatgagaatattgtgttttactcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tagcaatttcaaataatggatttttaaattatattttatgagaatattgtgttttactcc 277

                                                                       
Query: 121 acactattcttcgtttttcacatctgatatataatactaaagctatttctctgaagcact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 acactattcttcgtttttcacatctgatatataatactaaagctatttctctgaagcact 217

                           
Query: 181 tgttaagaagcacaaa 196
           ||||||||||||||||
Sbjct: 216 tgttaagaagcacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no192_h03.g1 MSMg01no192_h03.g1 CHROMAT_FILE:
MSMg01no192_h03.g1 PHD_FILE: MSMg01no192_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:09:49 2005
         (228 letters)



>mm_chr5_79274248_79274875
          Length = 628

 Score =  416 bits (215), Expect = e-121
 Identities = 224/227 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattatctctaatcttactgttattgaaaagtgctaattagttaatgagcattgaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattatctctaatcttactgttattgaaaagtgctaattagttaatgagcattgaagtgc 260

                                                                       
Query: 61  ttaactatgtcttacccttttagaagactgaaaaaaatggatgcctgctattgtattttt 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 ttaactatgtcttacccttttagaagactgaaaaaaatggatggctgctattgtattttt 320

                                                                       
Query: 121 ctattaagaaaactaaaacaaaataattattttataatgttatagccttttgagtctaat 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 321 ctattaagaaaactaaaacaaaataattattttataatgttatagccttttgagtcaaaa 380

                                                          
Query: 181 tgtaaagactgttttagtgtaactctgattattacaataaatataga 227
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtaaagactgttttagtgtaactctgattattacaataaatataga 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)