BAC Information

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BAC

Clone NameMSMg01-192O14
Chromosome15 (Build37)
Map Location 18,275,368 - 18,275,656
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040162, LOC666835
Downstream geneLOC666839, Cdh10, EG666857
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-192O14.T7 (MSMg01no192_o14.b1)MSMg01-192O14.TJ (MSMg01no192_o14.g1)
ACCAG382427AG382428
length1,3071,254
length of high quality
(start - end)
102 (40 - 141)381 (71 - 451)
definitionCHROMAT_FILE: MSMg01no192_o14.b1 PHD_FILE: MSMg01no192_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:57 2005CHROMAT_FILE: MSMg01no192_o14.g1 PHD_FILE: MSMg01no192_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:10:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCGCTATGCGCCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGAACTTTAACTTTCCAGATCTTCCAGGACCTCCCTCACTTAGCACCTCT
AAGAAGAGGAGGAGGAGGAAGGAGGAGGAGGAGGAGGAGGANGNGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGNNNGNNNNNG
NGGGNNNNGGGGGGGNGGGGGGGGGGGGGNNGGGGGGGGGGGGGGGGGGG
GGGGNGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGNGG
GGGGGGGGGNGGGGGGNGNGGGGGGNNGGGGGGGNGGGGGGGGGNGGGGG
GGGGGGGGGGGGNNNGGGGGGGGGGGGGGGGGGGGNGGGGGGGTTTTTTT
NGGGGGGGNGNGGGGNGTGGNTTTTTTTTTGTGTGNGGGTTTTTTTTTTT
TTCCCCCCCCCCCCCNGNNNNGNCCCCCCCCCTCACAAAAAAAAGGGTGT
TTTTTTTTTNTTTTTTTCTTTTTTTCCCCTTTTCTTTTTTTTTTTTTCTT
CTTTCTTCTCTCCCTCTTCTCTTCTCTTTTTTTCTCTCTTCCTTTTCTCC
TTTCTTCCCTTCTCTTTTCTTTCTTTCTTCTCTTTTCTCCTTTCTCCTCC
TTTTTTCTCCTTTTTCTTCTCTCTTCTCTTTTCTTTTTTCTTCTCTTTTT
CTCTTCTTTCTTTTTCTTCTTTTCTTTTCTTTTCTTTTTTCTCTTTCTCT
CTTCTTCTTTTTTTTTTCTCTTCTTCTTCTTCTCTTCCTCTGTTCCCCCC
TTTCTCTCTTTCTTCTCTTTCTGTTCTTCCCCCTCCCTCCCTCCCTTTCC
TCTTCTTTTCTTTTTTTTTCTTTTCTCCTTTCTCTCCTTTCCTTCTGTCT
TTTCTCTTTCTTCCTTTTTTTTTTCTTTCTCCTTTTCTTCTTCTCTTCGT
CTTTTCTCTTTTTTTTTTTCTCTTTTTCTTTTTTCTCTCTCTCTTCTCTT
CCCTCTCTTCTCCTTTCTTTTTCTCCTTTTTTTTTTCCTCTCTTTTCTCT
TTTTTTTTTCCTCTTTTTTCTCTTTTCCCTTTCTCTTTTTCTTTTTTTTC
TTTTCTTCTTCTTCTTCTTCCTCTCTTTTTTCCCCTTCTTTCTCTTGTTT
CTCTTTCTTCCTTTTCCCTTTCCTCTTCTTTTCTTTTTCTCTTTTTTTCC
TCTTTTTCTTTTTTCCTTTTCTTCTCTTTCCTTTCTCTCCTTTCTCTTNT
TCTCCTCTCTCTTCTCTCTTTTCCTTCCTTTTTTTTTTCTTTCTTTTTTT
TTCTCTT
NNTTATAGAAGGNAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCATTAATATATTTATTCTTGATAACTAAG
AATACATGATATATTTTTATTTATTGCAAAATGTCTTAGAAAAACGTAGC
ACCATTCAGAAGAAATGTATAATTAACGTAGTAATAATTTTCAAAATAAT
TAGAGATTACTCATGTATATGAAAACCATTTATAGACGCTAGAGATTTTT
CTACAATGTAAAATGCAGACAGTTCATTTACATTCTTAACTCCTATCTAA
CTTGTTCGTAAAATTTTCACAAATTTGTAAAAATTCACAAATTTTTAAAA
GTTATTTTTTTTTTTAAAGATTTATTTATTTATTATATGTAAGTACACTG
TAGCTGTCTTCAGACACTCCAGAAGAGGGCGTCAGATCTTGTTACAGATG
TTTTTTTTCCCCCCCCCGGTTGCTGGGATTTGACCTCCAAACAAAGGGAA
GAGCNGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCTAAAAGT
TATTTTAAATTCATCATTAATAACTTGAGCTTACTTATTATCTAACTGAA
TGAAAAGACTTTGAAACAGACTGAATGCAGAAAAGGTAAGAATCAAGCAA
TGCCCTATGATACAAGTCCTTGATATCTATGTACACACACACGCACACGC
ACATGCACATGCACACGCACACACACATATATATGTATATGCGTATATAT
ATTAAATATATATATACATATATATGTGAAAAGAAATTTATTACTCCAAA
ATTACATTTTATTCTTTTGAAACATTGTTTTTAAATTAATTGTATAATCT
GTGAGTTTAATATTAACTATAAAACGGAATCTTTTAAAATTCCCTCTTTT
TATTTTTATTGACAATACAAAAATTACTTATTCTGGTTTACAAAATCCAT
TTTTTATTTCATTTGACTTATATCTTTATTCTCTTTTTAGTATCTCTTCC
TACTTTTCTCTTTTTCAATCCTCATATTTTTTCCTCCCTTTCTTTCTTTT
CTTTTTTTAACCATATACTCTTCTTTATTATATCTTTTTGTTACCTTCTT
CTTCTCCTGTCTTCCTCATTATCATTTTCTGCTTACTTTTTCTATATATT
CTCTTCTTTTTGTTTTCTTTTTTCTTCTTTTCTTTATTTCTACTCTTACT
CTCTTTCTTCTTCTTTCTTTCTTCTTCATTTATTTTCTCCTTTTACTTCT
TCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no192_o14.g1 MSMg01no192_o14.g1 CHROMAT_FILE:
MSMg01no192_o14.g1 PHD_FILE: MSMg01no192_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:10:57 2005
         (381 letters)



>mm_chr15_18275175_18275956
          Length = 782

 Score =  536 bits (277), Expect = e-156
 Identities = 286/289 (98%), Gaps = 1/289 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattaatatatttattcttgataactaagaatacatgatatatttttatttattgcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tcattaatatatttattcttgataactaagaatacatgatatatttttatttattgcaaa 423

                                                                       
Query: 61  atgtcttagaaaaacgtagcaccattcagaagaaatgtataattaacgtagtaataattt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 atgtcttagaaaaacatagcaccattcagaagaaatgtataattaacgtagtaataattt 363

                                                                       
Query: 121 tcaaaataattagagattactcatgtatatgaaaaccatttatagacgctagagattttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 362 tcaaaataattagagattactcatgtatatgaaaaccatttatagactctagagattttt 303

                                                                       
Query: 181 ctacaatgtaaaatgcagacagttcatttacattcttaactcctatctaacttgttcgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctacaatgtaaaatgcagacagttcatttacattcttaactcctatctaacttgttcgta 243

                                                            
Query: 241 aaattttcacaaatttgtaaaaattcacaaattttt-aaaagttatttt 288
           |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 242 aaattttcacaaatttgtaaaaattcacaaattttttaaaagttatttt 194


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 782
Length adjustment: 9
Effective length of query: 372
Effective length of database: 773
Effective search space:   287556
Effective search space used:   287556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)