BAC Information

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BAC

Clone NameMSMg01-194I18
Chromosome15 (Build37)
Map Location 96,123,568 - 96,173,000
singlet/doubletdoublet
Overlap genenone
Upstream geneNell2, Dbx2, LOC100042684, LOC667849, EG629300, LOC667864, Tmem16f, LOC100043329, D030018L15Rik, LOC100043335, EG667869, LOC667874, LOC667894
Downstream geneArid2, Sfrs2ip, Slc38a1, Slc38a2, LOC667941, LOC546651, Slc38a4, Amigo2, BC038822, LOC100043354
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-194I18.T7 (MSMg01no194_i18.b1)MSMg01-194I18.TJ (MSMg01no194_i18.g1)
ACCAG383427AG383428
length781805
length of high quality
(start - end)		326 (46 - 371)668 (138 - 805)
definitionCHROMAT_FILE: MSMg01no194_i18.b1 PHD_FILE: MSMg01no194_i18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:26 2005CHROMAT_FILE: MSMg01no194_i18.g1 PHD_FILE: MSMg01no194_i18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:13:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,123,568 - 96,123,884)(96,172,336 - 96,173,000)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCAGGACAGCACGGGCTACACAGAAAAAAAACCTTTCTCAAGAAAA
ATCTCCTAAAAACAAAAATAAATAATTAATTTTTGATATAAGGTTGAGGG
AAGTATTGAATCCGACTATTTTCAACAGCCAGAGTTAACAGTGTAGCTGT
AGGTCAACTTGATGTGTTCTTTCTAAAGCTTGGAAATATTAAAAGGGAGG
TGGCAAGTCTTGGACATTGAAACTGTACTCAAGAAAGCTCAAGGGGTGCT
GTGTTTCTTGTATCCAAAACCCCAGTGCTGTTTTGTTTGTTTGTTTGTTT
GTTTGTTTTGGTTTTGGTTNNNCANNNNNNNNNNNANNNANATATTTAAA
TTTTTTTAATAATTTTCCCCCCCCCCTATCCACATTTATTATTTTCCTTT
CCCCTCTCCATCATTTTTTTTTCTTCTATACAATTCCCCTCACTTTTTTC
TTCCTATATCTTCTTATATTACCCCCCTCTCTCATTTTACTTCTCCCCCC
CTAACTTCTTCTATTTTATTTCCATTCTTTTTTTTTTACTATCCCCTTAC
TCCTTCCCTTTTCCTTATTTTTTCTCTTTTCTATTCCCCCCCTTTCTTAC
TTCCACAATCCTTTTTACTTTTTATTATCTTTTTCTCCCCCCCTTTTCTT
TTCCTCCTCTTTCCCCTCTCTCTTTTTTTTCCCCTCACCCTTCTCTCTTC
CTATTTTTATCTCTAATTCCCCCCTTTTTTT

NTTCCCTTCCCCCCTTTTNTTTTCCCCCCCCCCTTCCNANNNNNNNTATA
ANNNNNNNNNCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAAAAAAAAAA
AAAAAAAAAAAAAGAACCACTTAAAGCTGATCACTCCTCCCCACCCCCTC
CCCCAGACAGGGTCTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTTT
GTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCG
AGTGCTGGGACTAAAGGCGTGCACCACCACCCATCAAAGCTGATTCTTGA
CTAAACACCTTAGTACATAACAAAGAGAACAAATCTGTTTCCAGACCCAG
TGGCTAGGGAAACGCTACCTCCTGATCACGGCAGACCTCAGGAGGAGAGC
ATGCTCCAGTACCTGCGAACAACTGCAGCATCTCAAGTGCCAGCGTTAAC
TGACCAGTAAATCAGAAGCAACAGGAAATGAGGCATTTCCAGAAGTTGAG
AGATACCCAATGAATATTTTATTCATCAATATTCTTTTTAAACTATGGAA
ATAGAAACTCAAGAGTACAGAGGCCCTGCCACCAATGGAAATAAATATTC
TAGCAAAATCAAATCATACCATGTAGAAACTGACTATATATGCTTTTATG
CAGATTAACAGGATGTCTCTTGCCCAATCCATTTACCAAACAATCAAAGC
AACAAAATCAAAGAGAAGACAAAAACCAACCAATAAACAAACAAAACAAA
CAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no194_i18.b1 MSMg01no194_i18.b1 CHROMAT_FILE:
MSMg01no194_i18.b1 PHD_FILE: MSMg01no194_i18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:26 2005
         (326 letters)



>mm_chr15_96123364_96124089
          Length = 726

 Score =  605 bits (313), Expect = e-177
 Identities = 316/317 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggacagcacgggctacacagaaaaaaaacctttctcaagaaaaatctcctaa 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggacagcaggggctacacagaaaaaaaacctttctcaagaaaaatctcctaa 264

                                                                       
Query: 65  aaacaaaaataaataattaatttttgatataaggttgagggaagtattgaatccgactat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaacaaaaataaataattaatttttgatataaggttgagggaagtattgaatccgactat 324

                                                                       
Query: 125 tttcaacagccagagttaacagtgtagctgtaggtcaacttgatgtgttctttctaaagc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttcaacagccagagttaacagtgtagctgtaggtcaacttgatgtgttctttctaaagc 384

                                                                       
Query: 185 ttggaaatattaaaagggaggtggcaagtcttggacattgaaactgtactcaagaaagct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggaaatattaaaagggaggtggcaagtcttggacattgaaactgtactcaagaaagct 444

                                                                       
Query: 245 caaggggtgctgtgtttcttgtatccaaaaccccagtgctgttttgtttgtttgtttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caaggggtgctgtgtttcttgtatccaaaaccccagtgctgttttgtttgtttgtttgtt 504

                            
Query: 305 tgtttgttttggttttg 321
           |||||||||||||||||
Sbjct: 505 tgtttgttttggttttg 521


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no194_i18.g1 MSMg01no194_i18.g1 CHROMAT_FILE:
MSMg01no194_i18.g1 PHD_FILE: MSMg01no194_i18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:13:26 2005
         (668 letters)



>mm_chr15_96172011_96173078
          Length = 1068

 Score = 1278 bits (661), Expect = 0.0
 Identities = 664/665 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   aaaaaaaaaaaaaaaaaaaaaaaagaaccacttaaagctgatcactcctccccaccccct 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 990 aaaaaaaaaaaaaaaaaaaaaaaagaaccacttaaagctgatcactcctccccaccccct 931

                                                                       
Query: 63  cccccagacagggtctctctgtgtagctctggctgtcctggaactcactttgtagaccag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 930 cccccagacagggtctctctgtgtagctctggctgtcctggaactcactttgtagaccag 871

                                                                       
Query: 123 gctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctgggactaaaggcg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 gctggcctcgaactcagaaatccgcctgcctctgcctcccgagtgctgggactaaaggcg 811

                                                                       
Query: 183 tgcaccaccacccatcaaagctgattcttgactaaacaccttagtacataacaaagagaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tgcaccaccacccatcaaagctgattcttgactaaacaccttagtacataacaaagagaa 751

                                                                       
Query: 243 caaatctgtttccagacccagtggctagggaaacgctacctcctgatcacggcagacctc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 caaatctgtttccagacccagtggctagggaaacgctacctcctgatcacggcagacctc 691

                                                                       
Query: 303 aggaggagagcatgctccagtacctgcgaacaactgcagcatctcaagtgccagcgttaa 362
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aggaggagagcaagctccagtacctgcgaacaactgcagcatctcaagtgccagcgttaa 631

                                                                       
Query: 363 ctgaccagtaaatcagaagcaacaggaaatgaggcatttccagaagttgagagataccca 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ctgaccagtaaatcagaagcaacaggaaatgaggcatttccagaagttgagagataccca 571

                                                                       
Query: 423 atgaatattttattcatcaatattctttttaaactatggaaatagaaactcaagagtaca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 atgaatattttattcatcaatattctttttaaactatggaaatagaaactcaagagtaca 511

                                                                       
Query: 483 gaggccctgccaccaatggaaataaatattctagcaaaatcaaatcataccatgtagaaa 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaggccctgccaccaatggaaataaatattctagcaaaatcaaatcataccatgtagaaa 451

                                                                       
Query: 543 ctgactatatatgcttttatgcagattaacaggatgtctcttgcccaatccatttaccaa 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgactatatatgcttttatgcagattaacaggatgtctcttgcccaatccatttaccaa 391

                                                                       
Query: 603 acaatcaaagcaacaaaatcaaagagaagacaaaaaccaaccaataaacaaacaaaacaa 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 acaatcaaagcaacaaaatcaaagagaagacaaaaaccaaccaataaacaaacaaaacaa 331

                
Query: 663 acaaa 667
           |||||
Sbjct: 330 acaaa 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1068
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1058
Effective search space:   696164
Effective search space used:   696164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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