Query= MSMg01no195_d23.b1 MSMg01no195_d23.b1 CHROMAT_FILE:
MSMg01no195_d23.b1 PHD_FILE: MSMg01no195_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:24 2005
(678 letters)
>mm_chr15_51843689_51844760
Length = 1072
Score = 1102 bits (570), Expect = 0.0
Identities = 653/690 (94%), Gaps = 19/690 (2%)
Strand = Plus / Plus
Query: 1 aataaacattttgttgaacattgtctgtggagaatttattcactgaggggttacaagccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaacattttgttgaacattgtctgtggagaatttattcactgaggggttacaagccc 260
Query: 61 aaacatgcgctcccaacactcaaagctaatctcatttattttaaatagggagctattttc 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaacatgcgctcccaacactcaaagcttatctcatttattttaaatagggagctattttc 320
Query: 121 tagatagtagtctaatttgcccacaaaaagctcatccaatttttttttctcatcctaaaa 180
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 321 tagatagtagtctaatttgcccacaaaaagctcacccaatttttttt-ctcatcctaaaa 379
Query: 181 ttgtaatagtgtcattgaaggcacaaacatagcaagaaataagcacttactaaatactaa 240
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgtaatagtgtcattga-----caaacatagcaagaaataagcacttactaaatactaa 434
Query: 241 ctggatttaaagtttttgttgagttcatatgtttttctgtagtgtcctacatttaactta 300
||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 435 ctggatttaaagtctgcgttgagttcatatgtttttctgcagtgtcctacatttaactta 494
Query: 301 tactaaacttacctattaaaatccctctaagcaaaagaaaatattctgtgctagtaaatc 360
||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct: 495 tactaaacttacctattaaaatccctctaagcagaaggaaatactctgtgctagtaaatc 554
Query: 361 acacctttctgtgtctgtttagctctttcttccatttatctttagttaacatattatttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acacctttctgtgtctgtttagctctttcttccatttatctttagttaacatattatttg 614
Query: 421 tagatatttgggtcatggcttcttagggttgttttgttttgttttgttttgtttt----- 475
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 tagatatttgggtcatggcttcttagggttgttttgttttgttttgttttgttttgtttt 674
Query: 476 ------tcgagacagggtttctccgtatagccctggctgtcctggaactcactttgtaga 529
| |||||||| |||||| || |||||||||||||||||||||||||||||||||
Sbjct: 675 gtttttttgagacaggatttctctgtgtagccctggctgtcctggaactcactttgtaga 734
Query: 530 ccaggctggcctcaaactctgaaatccgcctgcctctgcttcccgagtgctgggattaaa 589
||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 735 ccaggctggcctcgaactctgaaatccgcctgcctctgcctaccgagtgctgggattaaa 794
Query: 590 ggcgtgtgccaccatgcccggctggcttcttagct-ttgagttcttccatcatgtcatct 648
|||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct: 795 ggcgtgtgccaccacgcccgcctggcttcttag-tattgagttcttccatcatgtcatct 853
Query: 649 gaactttttggctatattcagatcattagc 678
||||||||||||||||||||||||||||||
Sbjct: 854 gaactttttggctatattcagatcattagc 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1072
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1062
Effective search space: 709416
Effective search space used: 709416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_d23.g1 MSMg01no195_d23.g1 CHROMAT_FILE:
MSMg01no195_d23.g1 PHD_FILE: MSMg01no195_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:24 2005
(596 letters)
>mm_chr15_51985819_51986814
Length = 996
Score = 1106 bits (572), Expect = 0.0
Identities = 590/596 (98%)
Strand = Plus / Minus
Query: 1 tttgagttctaggtcagaggccatattcttttcccattcatttctactacaggtctgcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tttgagttctaggtcagaggccatattcttttcccattcatttctactacaggtctgcca 666
Query: 61 tgtctctcccatgtttgcactcaatgtgtgatacctcattcaaggctgccctcacatatc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgtctctcccatgtttgcactcaatgtgtgatacctcattcaaggctgccctcacatata 606
Query: 121 actccatcaacaacccgctgaagtgtcctcaaagcaaggaaggatttctggtgctttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 actccatcaacaacccgctgaagtgtcctcaaagcaaggaaggatttctggtgctttctc 546
Query: 181 agagatacatcctttggaaccaccaggacaaaaggttagataaacacctctgaagtgtgc 240
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 545 agagatacatcctttggaaccaccaagacaaaaggttagataaacacctctgaagtgggc 486
Query: 241 actgtctttatgccctgttatctttgtaaggtcatcttcctggcttcctgatcacagtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 actgtctttatgccctgttatctttgtaaggtcatcttcctggcttcctgatcacagtga 426
Query: 301 aaaacacaggaagcacagaaacaagcaaacaatcaaaaaccctaaggtcagtttgaccag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaaacacaggaagcacagaaacaagcaaacaatcaaaaaccctaaggtcagtttgaccag 366
Query: 361 agttgccaaaagagcagcacaccgagtaatcccaggggtgactgatgagagaaccacgcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agttgccaaaagagcagcacaccgagtaatcccaggggtgactgatgagagaaccacgcc 306
Query: 421 actccatctctttctagcgcaattttactatctattggaatttttaactcaaaccccttt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 actccatctctttctagcgcaattttactatctattggaatttttaactcaaaccccttt 246
Query: 481 taatgcatctatgaatacttcaaatatttttttctctgagcacccgcgtgtacagtgatc 540
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 245 taatgcatctatgaatacttcaaatatttttttctctgagcacccatgtgtacagtgatc 186
Query: 541 tatggacaaagatgttcatttcagcattgtttgtagtaaaatattgaaagcaaatg 596
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 185 tatggacaaagatgttcatttcagcgttgtttgtagtaaaatattgaaagcaaatg 130
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space: 577796
Effective search space used: 577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|