BAC Information

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BAC

Clone NameMSMg01-195D23
Chromosome15 (Build37)
Map Location 51,843,889 - 51,986,543
singlet/doubletdoublet
Overlap geneAard, LOC100039720
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21
Downstream geneLOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745, Ext1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-195D23.T7 (MSMg01no195_d23.b1)MSMg01-195D23.TJ (MSMg01no195_d23.g1)
ACCAG383847AG383848
length748753
length of high quality
(start - end)
678 (64 - 741)596 (69 - 664)
definitionCHROMAT_FILE: MSMg01no195_d23.b1 PHD_FILE: MSMg01no195_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:24 2005CHROMAT_FILE: MSMg01no195_d23.g1 PHD_FILE: MSMg01no195_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:14:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,843,889 - 51,844,571)(51,985,948 - 51,986,543)
sequence
XXXXXXXXXXXXXXXXXXXXXXATTTTTCGGACTCGGCGGAATTCTCTAT
TAAGTCTCATAATAATAAACATTTTGTTGAACATTGTCTGTGGAGAATTT
ATTCACTGAGGGGTTACAAGCCCAAACATGCGCTCCCAACACTCAAAGCT
AATCTCATTTATTTTAAATAGGGAGCTATTTTCTAGATAGTAGTCTAATT
TGCCCACAAAAAGCTCATCCAATTTTTTTTTCTCATCCTAAAATTGTAAT
AGTGTCATTGAAGGCACAAACATAGCAAGAAATAAGCACTTACTAAATAC
TAACTGGATTTAAAGTTTTTGTTGAGTTCATATGTTTTTCTGTAGTGTCC
TACATTTAACTTATACTAAACTTACCTATTAAAATCCCTCTAAGCAAAAG
AAAATATTCTGTGCTAGTAAATCACACCTTTCTGTGTCTGTTTAGCTCTT
TCTTCCATTTATCTTTAGTTAACATATTATTTGTAGATATTTGGGTCATG
GCTTCTTAGGGTTGTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGT
TTCTCCGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTG
GCCTCAAACTCTGAAATCCGCCTGCCTCTGCTTCCCGAGTGCTGGGATTA
AAGGCGTGTGCCACCATGCCCGGCTGGCTTCTTAGCTTTGAGTTCTTCCA
TCATGTCATCTGAACTTTTTGGCTATATTCAGATCATTAGCAATAAAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGAGTTCTAGGTCAGAGGCCATATTCTTTT
CCCATTCATTTCTACTACAGGTCTGCCATGTCTCTCCCATGTTTGCACTC
AATGTGTGATACCTCATTCAAGGCTGCCCTCACATATCACTCCATCAACA
ACCCGCTGAAGTGTCCTCAAAGCAAGGAAGGATTTCTGGTGCTTTCTCAG
AGATACATCCTTTGGAACCACCAGGACAAAAGGTTAGATAAACACCTCTG
AAGTGTGCACTGTCTTTATGCCCTGTTATCTTTGTAAGGTCATCTTCCTG
GCTTCCTGATCACAGTGAAAAACACAGGAAGCACAGAAACAAGCAAACAA
TCAAAAACCCTAAGGTCAGTTTGACCAGAGTTGCCAAAAGAGCAGCACAC
CGAGTAATCCCAGGGGTGACTGATGAGAGAACCACGCCACTCCATCTCTT
TCTAGCGCAATTTTACTATCTATTGGAATTTTTAACTCAAACCCCTTTTA
ATGCATCTATGAATACTTCAAATATTTTTTTCTCTGAGCACCCGCGTGTA
CAGTGATCTATGGACAAAGATGTTCATTTCAGCATTGTTTGTAGTAAAAT
ATTGAAAGCAAATGCGCCTTGGGGCAGGGATAGTGTGTCCCAGAAGCTTC
AACCAATAAGATTATGCAAAAGGAGGACGACGAGGATGAGGAGGAAGAGG
AGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no195_d23.b1 MSMg01no195_d23.b1 CHROMAT_FILE:
MSMg01no195_d23.b1 PHD_FILE: MSMg01no195_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:24 2005
         (678 letters)



>mm_chr15_51843689_51844760
          Length = 1072

 Score = 1102 bits (570), Expect = 0.0
 Identities = 653/690 (94%), Gaps = 19/690 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   aataaacattttgttgaacattgtctgtggagaatttattcactgaggggttacaagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataaacattttgttgaacattgtctgtggagaatttattcactgaggggttacaagccc 260

                                                                       
Query: 61  aaacatgcgctcccaacactcaaagctaatctcatttattttaaatagggagctattttc 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 aaacatgcgctcccaacactcaaagcttatctcatttattttaaatagggagctattttc 320

                                                                       
Query: 121 tagatagtagtctaatttgcccacaaaaagctcatccaatttttttttctcatcctaaaa 180
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 321 tagatagtagtctaatttgcccacaaaaagctcacccaatttttttt-ctcatcctaaaa 379

                                                                       
Query: 181 ttgtaatagtgtcattgaaggcacaaacatagcaagaaataagcacttactaaatactaa 240
           ||||||||||||||||||     |||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttgtaatagtgtcattga-----caaacatagcaagaaataagcacttactaaatactaa 434

                                                                       
Query: 241 ctggatttaaagtttttgttgagttcatatgtttttctgtagtgtcctacatttaactta 300
           ||||||||||||| |  |||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 435 ctggatttaaagtctgcgttgagttcatatgtttttctgcagtgtcctacatttaactta 494

                                                                       
Query: 301 tactaaacttacctattaaaatccctctaagcaaaagaaaatattctgtgctagtaaatc 360
           ||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||
Sbjct: 495 tactaaacttacctattaaaatccctctaagcagaaggaaatactctgtgctagtaaatc 554

                                                                       
Query: 361 acacctttctgtgtctgtttagctctttcttccatttatctttagttaacatattatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acacctttctgtgtctgtttagctctttcttccatttatctttagttaacatattatttg 614

                                                                       
Query: 421 tagatatttgggtcatggcttcttagggttgttttgttttgttttgttttgtttt----- 475
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 615 tagatatttgggtcatggcttcttagggttgttttgttttgttttgttttgttttgtttt 674

                                                                       
Query: 476 ------tcgagacagggtttctccgtatagccctggctgtcctggaactcactttgtaga 529
                 | |||||||| |||||| || |||||||||||||||||||||||||||||||||
Sbjct: 675 gtttttttgagacaggatttctctgtgtagccctggctgtcctggaactcactttgtaga 734

                                                                       
Query: 530 ccaggctggcctcaaactctgaaatccgcctgcctctgcttcccgagtgctgggattaaa 589
           ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 735 ccaggctggcctcgaactctgaaatccgcctgcctctgcctaccgagtgctgggattaaa 794

                                                                       
Query: 590 ggcgtgtgccaccatgcccggctggcttcttagct-ttgagttcttccatcatgtcatct 648
           |||||||||||||| ||||| |||||||||||| | ||||||||||||||||||||||||
Sbjct: 795 ggcgtgtgccaccacgcccgcctggcttcttag-tattgagttcttccatcatgtcatct 853

                                         
Query: 649 gaactttttggctatattcagatcattagc 678
           ||||||||||||||||||||||||||||||
Sbjct: 854 gaactttttggctatattcagatcattagc 883


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1072
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1062
Effective search space:   709416
Effective search space used:   709416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no195_d23.g1 MSMg01no195_d23.g1 CHROMAT_FILE:
MSMg01no195_d23.g1 PHD_FILE: MSMg01no195_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:24 2005
         (596 letters)



>mm_chr15_51985819_51986814
          Length = 996

 Score = 1106 bits (572), Expect = 0.0
 Identities = 590/596 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgagttctaggtcagaggccatattcttttcccattcatttctactacaggtctgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tttgagttctaggtcagaggccatattcttttcccattcatttctactacaggtctgcca 666

                                                                       
Query: 61  tgtctctcccatgtttgcactcaatgtgtgatacctcattcaaggctgccctcacatatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 665 tgtctctcccatgtttgcactcaatgtgtgatacctcattcaaggctgccctcacatata 606

                                                                       
Query: 121 actccatcaacaacccgctgaagtgtcctcaaagcaaggaaggatttctggtgctttctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 actccatcaacaacccgctgaagtgtcctcaaagcaaggaaggatttctggtgctttctc 546

                                                                       
Query: 181 agagatacatcctttggaaccaccaggacaaaaggttagataaacacctctgaagtgtgc 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 545 agagatacatcctttggaaccaccaagacaaaaggttagataaacacctctgaagtgggc 486

                                                                       
Query: 241 actgtctttatgccctgttatctttgtaaggtcatcttcctggcttcctgatcacagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 actgtctttatgccctgttatctttgtaaggtcatcttcctggcttcctgatcacagtga 426

                                                                       
Query: 301 aaaacacaggaagcacagaaacaagcaaacaatcaaaaaccctaaggtcagtttgaccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aaaacacaggaagcacagaaacaagcaaacaatcaaaaaccctaaggtcagtttgaccag 366

                                                                       
Query: 361 agttgccaaaagagcagcacaccgagtaatcccaggggtgactgatgagagaaccacgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agttgccaaaagagcagcacaccgagtaatcccaggggtgactgatgagagaaccacgcc 306

                                                                       
Query: 421 actccatctctttctagcgcaattttactatctattggaatttttaactcaaaccccttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 actccatctctttctagcgcaattttactatctattggaatttttaactcaaaccccttt 246

                                                                       
Query: 481 taatgcatctatgaatacttcaaatatttttttctctgagcacccgcgtgtacagtgatc 540
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 245 taatgcatctatgaatacttcaaatatttttttctctgagcacccatgtgtacagtgatc 186

                                                                   
Query: 541 tatggacaaagatgttcatttcagcattgtttgtagtaaaatattgaaagcaaatg 596
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 185 tatggacaaagatgttcatttcagcgttgtttgtagtaaaatattgaaagcaaatg 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)