BAC Information

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BAC

Clone NameMSMg01-197B06
Chromosome15 (Build37)
Map Location 32,263,427 - 32,264,021
singlet/doubletsinglet
Overlap geneSema5a
Upstream gene5730557B15Rik, Ropn1l, LOC622810, March6, Cmbl, Cct5, A930016P21Rik, LOC667231, Tas2r119, 0610007N19Rik
Downstream geneLOC100040962, Sdc2, Pgcp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197B06.T7 (MSMg01no197_b06.b1)MSMg01-197B06.TJ (MSMg01no197_b06.g1)
ACCAG384951AG384952
length748856
length of high quality
(start - end)
598 (46 - 643)294 (125 - 418)
definitionCHROMAT_FILE: MSMg01no197_b06.b1 PHD_FILE: MSMg01no197_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:50 2005CHROMAT_FILE: MSMg01no197_b06.g1 PHD_FILE: MSMg01no197_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGCCTAGCCTCCAGCCAAGGGCAGTGATTTCTCCTTGACAATCA
TGCCTCTGTCAAAGACTATTGGCGTTGGACAGAAAGAGACTCCCTCTGAT
GATTTCAGCCAGAATGAAGACATCTTCTGAAAAGTGACAGTCTCCAGAGT
GTCGCCCTTGGAGGGACAACACTCTTGTAGTGGAGACTCCTCCGTCCTTG
CTTACTTTAAAAGGTTATTTTTTGCTTTAGGAGATGTGCAGAGCCTCACG
AGCTGTGGTAGAGGCAACAACAGAAAGCTGACGGACAGGCATCTGGAGGT
GGTGAGGAATACGCCCATTTATAGTCACAGTCTGTCTTGTGATACCAAGT
GGATCAGATTTATAGTTTAACCTCCCATTAATCATATTTCCCAAAGACTA
TTTTGTTCTTCCACTACTGGTTAGAGCCATGGCTAATATTTGCTGTTCAG
ACCTTCCTACCTATCTGCTCAGAATGTGGCATGTCTGTCACCCTTGACCA
AGCAAGGAAAGGCACCAAGGCAGCTGGCATTGTCTGAGCTTCCTATCAGA
GGGGACTCAGGANACTACTCATTCATTTCAAAGTTGCTATGTTCAGGTTT
TCTCTCAGCGGCTGGTGAAGGGCTCTATGTACTCTAGAATATGAAAATAG
TAGAGGGCAGATTTGGAGGAGCAGGCTCTGGCTTATCAGCAGCTGGCC
ATCCTTCCCTTTCATTCTCNNGCATAATATATTACTTCTNNTNNNCTTCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCTACACCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCACACACAAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAC
ACCCCTCCATTGTTGGTGGGATTGTAAGCTTGTACAAACACTCTGGAAAT
CAGTCTGGCAGTTCCTCAGAAAATTGGACATAGTATTACTGGAAGATCCT
GTAATACCTCTCCTGGGTATATATCCAGAACATGTTGTATCTGATAAGAA
GTGAACATGCTCCACTACCGCCATAGCAGCCTTATTTATAATAGCCAGAA
GCTGTAAAGATCCCATTATGTTCCTCAACAGAGGAAAGGATACTGTAAAA
ATGGAACATTTACACAATGGATTATTACTCACCTATTTTAACGATTGAAT
TTATGATATGCCCTAAGGTAATATGGATGGAACCTGTATTTTATTCTATC
TGGAGTGAGTGTAACCTATATCATATTGGTAACTCAACAAATCAATATAT
CTCCCAGAATAAATGGAACATTTAAATCTCATAACCTATACATTACTCCC
TCGATATTCCGACCTCAATTTTTTCTAGATCCACCCTGCATCCTTCACCG
ACATAATCGATTTACCTTTTCTTGCGGTCACCCACTTTGCTCCCCACTAA
ATAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_b06.b1 MSMg01no197_b06.b1 CHROMAT_FILE:
MSMg01no197_b06.b1 PHD_FILE: MSMg01no197_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:50 2005
         (598 letters)



>mm_chr15_32263224_32264221
          Length = 998

 Score = 1129 bits (584), Expect = 0.0
 Identities = 592/595 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctgcctagcctccagccaagggcagtgatttctccttgacaatcatgcctctg 63
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattcctgcctagcctccagccaagggcagtgagttctccttgacaatcatgcctctg 263

                                                                       
Query: 64  tcaaagactattggcgttggacagaaagagactccctctgatgatttcagccagaatgaa 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcaaagactattggcattggacagaaagagactccctctgatgatttcagccagaatgaa 323

                                                                       
Query: 124 gacatcttctgaaaagtgacagtctccagagtgtcgcccttggagggacaacactcttgt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gacatcttctgaaaagtgacagtctccagagtgtcgcccttggagggacaacactcttgt 383

                                                                       
Query: 184 agtggagactcctccgtccttgcttactttaaaaggttattttttgctttaggagatgtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtggagactcctccgtccttgcttactttaaaaggttattttttgctttaggagatgtg 443

                                                                       
Query: 244 cagagcctcacgagctgtggtagaggcaacaacagaaagctgacggacaggcatctggag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagagcctcacgagctgtggtagaggcaacaacagaaagctgacggacaggcatctggag 503

                                                                       
Query: 304 gtggtgaggaatacgcccatttatagtcacagtctgtcttgtgataccaagtggatcaga 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtggtgaggaatacgcccatttatagtcacagtctgtcttgtgataccaagtggatcaga 563

                                                                       
Query: 364 tttatagtttaacctcccattaatcatatttcccaaagactattttgttcttccactact 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttatagtttaacctcccattaatcatatttcccaaagactattttgttcttccactact 623

                                                                       
Query: 424 ggttagagccatggctaatatttgctgttcagaccttcctacctatctgctcagaatgtg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggttagagccatggctaatatttgctgttcagaccttcctacctatctgctcagaatgtg 683

                                                                       
Query: 484 gcatgtctgtcacccttgaccaagcaaggaaaggcaccaaggcagctggcattgtctgag 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gcatgtctgtcacccttgaccaagcaaggaaaggcaccaaggcagctggcattgtctgag 743

                                                                  
Query: 544 cttcctatcagaggggactcagganactactcattcatttcaaagttgctatgtt 598
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 744 cttcctatcagaggggactcaggaaactactcattcatttcaaagttgctatgtt 798


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 598
Length of database: 998
Length adjustment: 10
Effective length of query: 588
Effective length of database: 988
Effective search space:   580944
Effective search space used:   580944
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)