BAC Information

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BAC

Clone NameMSMg01-197L22
Chromosome15 (Build37)
Map Location 33,906,019 - 33,906,352
singlet/doubletsinglet
Overlap genenone
Upstream geneSdc2, Pgcp, 1700084J12Rik, Tspyl5
Downstream geneLOC675463, Mtdh, Laptm4b, Matn2, Rpl30, BC030476, Hrsp12, Pop1, Npal2, Kcns2, Stk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197L22.T7 (MSMg01no197_l22.b1)MSMg01-197L22.TJ (MSMg01no197_l22.g1)
ACCAG385350AG385351
length728735
length of high quality
(start - end)
329 (46 - 374)480 (129 - 608)
definitionCHROMAT_FILE: MSMg01no197_l22.b1 PHD_FILE: MSMg01no197_l22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:44 2005CHROMAT_FILE: MSMg01no197_l22.g1 PHD_FILE: MSMg01no197_l22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTAATCCCAACTTTCATCTTCATTTCTCATCAAGTGCTCTTAAT
AACTGAACCACCTCTACAATCAGAGATCTGCATCGCCAGACCCACCTTCA
TTTTCTTCTTAAATCATCAATCTTTGCCGTTGTTGGTTTTTGGCAGTGGT
AGGGAGATGGGAGGTAGTACCAGTAATAGTAGTGGTGACAATGGCAGTGG
TGGCAGTGGTAATGTTTCTGGGTACTCAGATTGCCTTGGGCTTCAGGAAA
GCAAAACCATGTCCCTGATGCACATAATGCACCCTGTCCCTTATATCCCA
GGATGACTTGATGGTTGCCATGCAAGTCAGCGATTTTCTTGAACTTCTGA
TCATCTTGCCTCCATCTCCCAAGCATTGGGACTCAGACATGCCTGCATAA
CCCACTTATGTGATATTAGGGATGGAACTTAGGACTTCCTGAATGGAGCA
AGCACTCTACAAGCTAAGCCACATCCCCAGCCTTGTGTGGTTTTTGGTTT
GTTAGTTACTTGGTATTTATATACTAATCCCGTTGTGTCTACAATAAACA
ATTGAATCTGAATTGTCTTCGTTTTGACCTCTTCAATACAATGATAACCA
GGTTGTGTTGGTGTTCCGCTTATACCATTTATTTTCACATCATCTTTTTT
TGCTTATTCTTAATCCCATAATTTTTTN
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCAGAAATTCTGAATGGTGTGAAGCTAGTAAGAG
AACTGCTATGTTGAATGCTTTTACCCGCAACGCAGAATGGGATGGTGACA
TGCTATTTAGTAGAAGGTCAATATGAAGCCAATACTAATCAGATTGGGTT
TCCTGTTGGAATGTATGCACAGGTTGCAATAGCTGCTCGTCGTGCTTGGA
ATCAATTACCAACTAAAGGGAATCTCAGTGGAAATTTAGCTAGTATTAGA
CAGGCTCCCAATGAACTTTTTCATTATTTTGTGGGTAGGCTACTAAGGGC
AGCCAGTAGAATTTTTGTAGATTCTCAAGCAGGAAATTCTTTTGTTACAC
AATTGGCTTATGAGAATGCTAATGCAGTGTGTTGCACCGCTATTTGACCA
TACAAAGCACAGAAAGACTTAGCTGGATATATTCCTCTTTGTGCAGAGAT
TGGGCCTTCATAGAATCAGGGCTTGGCCATGGCTACTGCTTTGCAAGGAA
CCACTGTGCAATGCATGCACAGAAATGAGGAAAGAAAGTATGTTTTAAAT
GTGGAGGTTTGGGTCATTTTAAAAATGATTGTCCTAGGAACAGAGAGGCT
GTGAGTGGACTTTCTTTTTCTGTCCCAGGAGTTTGTTCTCAGTGTATAAA
GGATAACCCTGGTCCAGTGATTGTAAATCTATGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_l22.b1 MSMg01no197_l22.b1 CHROMAT_FILE:
MSMg01no197_l22.b1 PHD_FILE: MSMg01no197_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:44 2005
         (329 letters)



>mm_chr15_33905824_33906552
          Length = 729

 Score =  569 bits (294), Expect = e-166
 Identities = 320/334 (95%), Gaps = 9/334 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtaatcccaactttcatcttcatttctcatcaagtgctcttaataactgaacc 64
           |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 gaattctggaatccgagctttcatcttcatttctcatcaagtgctcttaataactgaacc 255

                                                                       
Query: 65  acctctacaatcagagatctgcatcgccagacccaccttcattttcttcttaaatcatca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 acctctacaatcagagatctgcatcgccagacccaccttcattttcttcttaaatcatca 315

                                                                       
Query: 125 atctttgccgttgttggtttttggcagtggtagggagatgggaggtagtaccagtaatag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 316 atctttgccgttgttggtttttggcagtggtagggagatgggaggtagtaccagtgatag 375

                                                                       
Query: 185 tagtggtgacaatggcagtggtggcagtggt---------aatgtttctgggtactcaga 235
           | |||||||||||||||||||||||||||||         ||||||||||||||||||||
Sbjct: 376 tggtggtgacaatggcagtggtggcagtggtgacagtggtaatgtttctgggtactcaga 435

                                                                       
Query: 236 ttgccttgggcttcaggaaagcaaaaccatgtccctgatgcacataatgcaccctgtccc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ttgccttgggcttcaggaaagcaaaaccatgtccctgatgcacataatgcaccctgtccc 495

                                             
Query: 296 ttatatcccaggatgacttgatggttgccatgca 329
           ||||||||||||||||||||||||||||||||||
Sbjct: 496 ttatatcccaggatgacttgatggttgccatgca 529


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space:   230400
Effective search space used:   230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)