BAC Information

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BAC

Clone NameMSMg01-198C09
Chromosome15 (Build37)
Map Location 52,286,925 - 52,413,329
singlet/doubletdoublet
Overlap geneLOC100039748
Upstream geneLOC100039662, Eif3s3, LOC100039679, D530033C11Rik, Rad21, Aard, LOC100039720, LOC665219, Slc30a8
Downstream geneThrap6, LOC100039745, Ext1, Samd12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198C09.T7 (MSMg01no198_c09.b1)MSMg01-198C09.TJ (MSMg01no198_c09.g1)
ACCAG385594AG385595
length748722
length of high quality
(start - end)
315 (36 - 350)285 (76 - 360)
definitionCHROMAT_FILE: MSMg01no198_c09.b1 PHD_FILE: MSMg01no198_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:17 2005CHROMAT_FILE: MSMg01no198_c09.g1 PHD_FILE: MSMg01no198_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:18:17 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,413,020 - 52,413,329)(52,286,925 - 52,287,209)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTTTG
TTATGCGTCCCCCAGGAAACCTTTTCTCCTTCAAGTCTACTTAAAACTGT
TGGGCTCTGTGTCTCCCACATTGTGGCCTTACTCACTGTGATAGTATCAG
TGCTGATATCATTATTTACGTTGATATGCATACAGGAACTCTCTTGTGCT
GATTATTCAATAAATTCTGACTGAACATGTGCCTATGAATAATGTGCATA
TCCTCTGTGCATTAACCTTGACCTCACCTGCAGCCATCATTGGCTCCTTG
CAAAGTGAGACTTCTAACGCTTAAATTGTTAGAGAGACTGTTGTGTTGTT
TGNATCAGTTCCNAGACAAAGCTTGAAATGAATGCCTCAGCTGACTGTTT
TGGAGGCTTTGTAAAAAAAAAAAGAGATCTGAAGGTTTGACTCTACAATC
ACTGTCTGACTTTATTAACAAAATACTGGGCTTGGAAGTAAAGTTAGAGT
TTGGAGTGCACGTTTAGTAACTACTGTCTCTTGAAACCTTGTGAAACCGG
TTTGTGATATGCCTTATCCAAGATTTTCTATTCCTGCACAGAACTCTTGA
CCAGGATAACAGGTTGAGAATAAAACTATTATTCACTATAAACTACCAAC
ATCACTATATTACAAATAAAAAAAAAAAAAAAAGAAACTATACAAAAAAA
CAAAAGAAGAATAAAAACAAAAAAAAAAAGAAAGAATAAAATCCAAAA
ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACAGATGCCCTTATAGACAGGGAAG
CAGAGGAGTCCAATCAGAGGAGATGTAATGATGAAAAAGAGGTATCAGAG
TCATGGGAAATAGAAAACACCAAGCAAGTGCCAGCCTGCCCTAGAATCTG
AGAGTGATATGGAAATACATTATTCCCTAGCACATTCGGATAGCCAGAGG
AAGCAAAGCTGAATAGCATTTTCTTTCCAAAATCATTAAACTTGAATCCA
TGCATTTTAATTGTCATATTTGACTATTTTTAAAGTTTGTATCAGTTCAA
ATGTAGACCCCTTTTTTCTTGACCCACCGCCCCTCTATATCATGGTTTAA
TTTTATTATTTTTACAAGTTCACCTATTGACTAACAGATGTAGGTTTTAT
CAAAGTCACAAGCAAGCTACTTCCAAGCTGTGTCCCTGAGCAGTCTGGAA
TGATCAGCAAGACATGTCAGTAGACATGACCAAATGCATTATCCAGAACC
TGTAGCAAATCTTTGGGCACATCGTTTCAGAACCAGGATTTTATCTGCTT
CTTATGCACCCACCCTTTGTATCTGCTGAGTTTCTTCCCAGTCATAGTGA
ACATTGAAGTTAAATTCAAAGCCTTTCTTGACTGAATGTTCCCAACACAT
GGAGATGATAAATGTTTCACGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_c09.b1 MSMg01no198_c09.b1 CHROMAT_FILE:
MSMg01no198_c09.b1 PHD_FILE: MSMg01no198_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:17 2005
         (315 letters)



>mm_chr15_52412817_52413531
          Length = 715

 Score =  545 bits (282), Expect = e-159
 Identities = 303/310 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcctttgttatgcgtcccccaggaaaccttttctccttcaagtctacttaaaact 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ggaattcctttgttatgtgtcccccaggaaaccttttctccttcaagtctacttaaaact 454

                                                                       
Query: 64  gttgggctctgtgtctcccacattgtggccttactcactgtgatagtatcagtgctgata 123
           ||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 453 gttgggctctgtgtctcacacattgtggccttacccactgtgatagtatcagtgctgata 394

                                                                       
Query: 124 tcattatttacgttgatatgcatacaggaactctcttgtgctgattattcaataaattct 183
           | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 393 ttattatttacgttgatatgcatacaggaactctcttgtgcttattattcaataaattct 334

                                                                       
Query: 184 gactgaacatgtgcctatgaataatgtgcatatcctctgtgcattaaccttgacctcacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 gactgaacatgtgcctatgaataatgtgcatatcctctgtgcattaaccttgacctcacc 274

                                                                       
Query: 244 tgcagccatcattggctccttgcaaagtgagacttctaacgcttaaattgttagagagac 303
           ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 273 tgcagccatcactggctccttgcaaagtgagacttctaaagcttaaattgttagagagac 214

                     
Query: 304 tgttgtgttg 313
           ||||||||||
Sbjct: 213 tgttgtgttg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no198_c09.g1 MSMg01no198_c09.g1 CHROMAT_FILE:
MSMg01no198_c09.g1 PHD_FILE: MSMg01no198_c09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:17 2005
         (285 letters)



>mm_chr15_52286725_52287409
          Length = 685

 Score =  528 bits (273), Expect = e-154
 Identities = 282/285 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagatgcccttatagacagggaagcagaggagtccaatcagaggagatgtaatgatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acagatgcccttatagacagggaagcagaggagtccaatcagaggagatgtaatgatgaa 260

                                                                       
Query: 61  aaagaggtatcagagtcatgggaaatagaaaacaccaagcaagtgccagcctgccctaga 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaagaggtatcagagtcatgggaaatagaaaacaccaagcaagtaccagcctgccctaga 320

                                                                       
Query: 121 atctgagagtgatatggaaatacattattccctagcacattcggatagccagaggaagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctgagagtgatatggaaatacattattccctagcacattcggatagccagaggaagca 380

                                                                       
Query: 181 aagctgaatagcattttctttccaaaatcattaaacttgaatccatgcattttaattgtc 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctgaatagtattttctttccaaaatcattaaacttgaatccatgcattttaattgtc 440

                                                        
Query: 241 atatttgactatttttaaagtttgtatcagttcaaatgtagaccc 285
           |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 atatttgactatttttaaagtttgtatcagttcaaacgtagaccc 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space:   186576
Effective search space used:   186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)