Query= MSMg01no198_f01.b1 MSMg01no198_f01.b1 CHROMAT_FILE:
MSMg01no198_f01.b1 PHD_FILE: MSMg01no198_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:30 2005
(322 letters)
>mm_chr15_61214952_61215673
Length = 722
Score = 480 bits (248), Expect = e-140
Identities = 291/318 (91%), Gaps = 22/318 (6%)
Strand = Plus / Minus
Query: 5 gaattccaagaaccttaatgtttggtttagctctgctctcaatatcctctatgatcttta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaattccaagaaccttaatgtttggtttagctctgctctcaatatcctctatgatcttta 392
Query: 65 caaaattatttcatcttttcagcaattgctttccaatctataaaaaattatatagaacat 124
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 391 caaaattatttcatcttttcagcaattactttcaaatctataaaaaattatatagaacat 332
Query: 125 ataggagaaatagagtcatattaacaacagctacaatgaatctccattttaaaaacagaa 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 atatgagaaatagagtcatattaacaacagctacaatgaatctccattttaaaaacagaa 272
Query: 185 ctaagagttccagattaaaagatctatgctgattgtcttgggcataaagggctttgtatt 244
|||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 271 ctaagagtgccagattaaaagatctatgatgattgtcttgggcataaagggctttgtatt 212
Query: 245 ccctgacaataaataaatgaatgaatgaatgaatgaatgaataaataaataaataaataa 304
|||||||||||||||||| || ||||||||||||||||||||
Sbjct: 211 ccctgacaataaataaat-aa-------------------ataaataaataaataaataa 172
Query: 305 atacaaaaaaccccaaaa 322
| |||||||||||||||
Sbjct: 171 a--caaaaaaccccaaaa 156
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space: 223169
Effective search space used: 223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_f01.g1 MSMg01no198_f01.g1 CHROMAT_FILE:
MSMg01no198_f01.g1 PHD_FILE: MSMg01no198_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:30 2005
(636 letters)
>mm_chr15_61202195_61203228
Length = 1034
Score = 1118 bits (578), Expect = 0.0
Identities = 621/636 (97%), Gaps = 2/636 (0%)
Strand = Plus / Plus
Query: 1 aatctccaagacccacatgggggaaagaaatggcacattctaacaagctgtcctctgacc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctccaagacccacgtgggggaaagaaatggcacattctaacaagctgtcctctgacc 260
Query: 61 tccactcatgcacagtgagatggtcctccccacaatcatacatccacaaaataaacaaaa 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tccactcatgcacagtgagatggtcctccccacaatcatacattcacaaaataaacaaaa 320
Query: 121 tgtaatgaaagcatgcatatatgtatattcatatttaaatctgaaatgatatttcatttt 180
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 321 tgtaatgaaagcatgcatata--tatattcatatttaaatctgaaatgatacctcatttt 378
Query: 181 catttggaaaattctagaaataagtcaaatataatgtcagtatattagtttatcggctcg 240
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 379 catttggaaaattctaaaaataagtcaaatataatgtcagtatattagtttatcagctcg 438
Query: 241 gttgaaagctcattcttgatgttccccccaaactcacattatcccttataaggcctctat 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 439 gttgaaagctcattcttgatgttccccccaaactcacattatccctgataaggcctctat 498
Query: 301 ttatctcaaaattacattataccatgacaagcatggccatttaatttttattatttaaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ttatctcaaaattacattataccatgacaagcatggccatttaatttttattatttaaac 558
Query: 361 tgggctctttggagagtggcatgcataattaatgattaaaatagaccaatagatacaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgggctctttggagagtggcatgcataattaatgattaaaatagaccaatagatacaaag 618
Query: 421 tgagtctataccaacacaaaaacagatcacattgattttgctcatcagctcaactacctg 480
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 619 tgagtctacaccaacacaaaaacagatcacattgattttgatcatcagctcaactccctg 678
Query: 481 actcctcctcttgtcagtaagtccctgccatatttatctgatagtatgctttagctacag 540
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 679 cctcctcctcttgtcagtaagtccctgccatatttacctgatagtatgctttagctacag 738
Query: 541 cacctaacacagtacttggaatttggaaagatcacatcaatcattgtcctttatcatggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cacctaacacagtacttggaatttggaaagatcacatcaatcattgtcctttatcatggc 798
Query: 601 aaaagcatagataaaatgatcctattcggcattcta 636
|||||||||||||||||||||||||| |||||||||
Sbjct: 799 aaaagcatagataaaatgatcctatttggcattcta 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1034
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1024
Effective search space: 641024
Effective search space used: 641024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
