Query= MSMg01no198_f14.b1 MSMg01no198_f14.b1 CHROMAT_FILE:
MSMg01no198_f14.b1 PHD_FILE: MSMg01no198_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:33 2005
(319 letters)
>mm_chr15_23344874_23345593
Length = 720
Score = 596 bits (308), Expect = e-175
Identities = 311/312 (99%), Gaps = 1/312 (0%)
Strand = Plus / Minus
Query: 5 gaattcagcccttactgaatgtacatagattccctggatgaattcttcattgtcacacta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattcagcccttactgaatgtacatagattccctggatgaattcttcattgtcacacta 457
Query: 65 taacattgtcccttcagtggagagaaaccatagctttcttattcccttggcttcctctcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 taacattgtcccttcagtggagagaaaccatagctttcttattcccttggcttcctctcc 397
Query: 125 ctacatagcccaggccagcctcagtttctgttctcacatttgggttggataagattgcat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ctacatagcccaggccagcctcagtttctgttctcacatttgggttggataagattgcat 337
Query: 185 acatattgaacactctaggcccaaatccttttgtatcttctaaattgtcttctcaggccc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 acatattgaacactctaggcccaaatccttttgtatcttctaaattgtcttctcaggccc 277
Query: 245 caagagggctcttctcttatttgcataatccccacagt-aaaaaaaaaatagtgcacttt 303
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 276 caagagggctcttctcttatttgcataatccccacagtaaaaaaaaaaatagtgcacttt 217
Query: 304 aaatattaatca 315
||||||||||||
Sbjct: 216 aaatattaatca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 720
Length adjustment: 9
Effective length of query: 310
Effective length of database: 711
Effective search space: 220410
Effective search space used: 220410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_f14.g1 MSMg01no198_f14.g1 CHROMAT_FILE:
MSMg01no198_f14.g1 PHD_FILE: MSMg01no198_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:18:33 2005
(607 letters)
>mm_chr15_23315970_23316974
Length = 1005
Score = 1091 bits (564), Expect = 0.0
Identities = 596/608 (98%), Gaps = 4/608 (0%)
Strand = Plus / Plus
Query: 1 tgggcagcaagtctagatatgctacagggacaattggtctgcataaatgagtcatttctc 60
|||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct: 201 tgggcagcaagtctagatctgctacagggacaactggtctgcacaaatgagtcatttctc 260
Query: 61 cagaagctgcctttctaacttcaagattccaggtttagttgttattgtaattcttctatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaagctgcctttctaacttcaagattccaggtttagttgttattgtaattcttctatc 320
Query: 121 aactactttttttt-ccacaagtacatagctttatatttcttacctcattatttattaac 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactactttttttttccacaagtacatagctttatatttcttacctcattatttattaac 380
Query: 180 tcagaacataacatcttgtttttatttattcttaaaagtaacacatgaaatttcattcaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcagaacataacatcttgtttttatttattcttaaaagtaacacatgaaatttcattcaa 440
Query: 240 tttctctcataaaagacaacttcaattcagtctttgcacaaaacagacagccaaaatttt 299
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 441 tttctctcataaaagacaacttcaattcagtctttgcacaaagcagacagccaacatttt 500
Query: 300 gttgtaaatgcacctcaacctagcttgattactccttcctgtggaagcttctccaccctt 359
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 gttgtaaatgcacctcaacctagcttgattactccttcccgtggaagcttctccaccctt 560
Query: 360 aaccttgattaatttaattgttccatcatctggatcaaagtaggcttatttttttttctt 419
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 aaccttgattaattaaattgttccatcatctggatcaaagtaggcttatttttt---ctt 617
Query: 420 gttattgtatatatctttttctgtgttgcatatactggcttcagaaatataaactcatgc 479
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gttattgtatatagctttttctgtgttgcatatactggcttcagaaatataaactcatgc 677
Query: 480 aatatattttgattatattctttctcaactcttaacatcttctacccagggctttcttaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aatatattttgattatattctttctcaactcttaacatcttctacccagggctttcttaa 737
Query: 540 tttccttatcttccaacttcatattctttgtcactttcaaaatgataagcaaaacaaaga 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttccttatcttccaacttcatattctttgtcactttcaaaatgataagcaaaacaaaga 797
Query: 600 aagaaaga 607
||||||||
Sbjct: 798 aagaaaga 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1005
Length adjustment: 10
Effective length of query: 597
Effective length of database: 995
Effective search space: 594015
Effective search space used: 594015
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
