Query= MSMg01no198_m23.b1 MSMg01no198_m23.b1 CHROMAT_FILE:
MSMg01no198_m23.b1 PHD_FILE: MSMg01no198_m23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:09 2005
(312 letters)
>mm_chr15_38001428_38002139
Length = 712
Score = 524 bits (271), Expect = e-153
Identities = 305/331 (92%), Gaps = 24/331 (7%)
Strand = Plus / Plus
Query: 5 gaattcaggtcctctgcaagagcaggacacattcttcttagccactgaaccagctcttta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggtcctctgcaagagcaggacacattcttcttagccactgaaccagctcttta 264
Query: 65 tcccctggttttggtaatttgattgcagttttcaagagtgagctccatagatgcctgtca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcccctggttttggtaatttgattgcagttttcaagagtgagctccatagatgcctgtca 324
Query: 125 catatgtcatattgaaatgtccaaaagctgggacatgcttaatagatagagaggactagg 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 325 catatgtcatattgaaatgtccaaaagctgggacatgcttgatagatagagaggactagg 384
Query: 185 gagatagctcagctggaagagtgcttgcctagatacacaagaaaatcctgggtttgcata 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagatagctcagctggaagagtgcttgcctagatacacaagaaaatcctgggtttgcata 444
Query: 245 aggaaaacttagatgtagtaacttacgc-----------------------tagaggaaa 281
|||||||||||||||||||||||||||| |||||||||
Sbjct: 445 aggaaaacttagatgtagtaacttacgcctataaatctcctgggaggaggctagaggaaa 504
Query: 282 taaagacaaggtcattcttnggctacaaagt 312
||||| ||||||||||||| |||||||||||
Sbjct: 505 taaaggcaaggtcattctt-ggctacaaagt 534
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 712
Length adjustment: 9
Effective length of query: 303
Effective length of database: 703
Effective search space: 213009
Effective search space used: 213009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no198_m23.g1 MSMg01no198_m23.g1 CHROMAT_FILE:
MSMg01no198_m23.g1 PHD_FILE: MSMg01no198_m23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:09 2005
(649 letters)
>mm_chr15_38023970_38025018
Length = 1049
Score = 1216 bits (629), Expect = 0.0
Identities = 644/649 (99%)
Strand = Plus / Minus
Query: 1 cttgtggaaagtactggccttacgctgttggacggaaaagatgagtatgttgcttgcgct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cttgtggaaagtactggccttacgctgttggacggaaaagatgagtatgttgcttgcgct 647
Query: 61 ctgactcagtccttcccgtaaagggctctgagcagagaaggcaccggcctgtaaggaact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ctgactcagtccttcccgtaaagggctctgagcagagaaggcaccggcctgtaaggaact 587
Query: 121 ggattccaacgcaggaggagaaaggagggatatatgaagagctgtctgtgaggagattct 180
||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 586 ggatttcaacgcaggaggagaaaggagggaaatatgaagagctgtctgtgaggagattct 527
Query: 181 tcccagtcttcttccatgagttctcagagacactgcttccgtcaagccctgccaccagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 tcccagtcttcttccatgagttctcagagacactgcttccgtcaagccctgccaccagtc 467
Query: 241 tttctcgtgttggccatgcctctcgtgtgagaccaacttcccatttcatcctgtgaggca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tttctcgtgttggccatgcctctcgtgtgagaccaacttcccatttcatcctgtgaggca 407
Query: 301 gaacttgacctttctctaaccctcacctataaaacctaggcatatgaaattgttcctgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 gaacttgacctttctctaaccctcacctataaaacctaggcatatgaaattgttcctgtc 347
Query: 361 agtcaaaagtagacttgccctggctacactctatgcattctgcattctattgcctgtaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 agtcaaaagtagacttgccctggctacactctatgcattctgcattctattgcctgtaga 287
Query: 421 acacttgtttacactttatagtacttctcattattagaataaattaccaagattatttct 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 gcacttgtttacactttatagtacttctcattattagaataaattaccaagattatttct 227
Query: 481 tcttctccttcctcctcctacaacccctcctccccccaacactaagtccttgagagcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tcttctccttcctcctcctacaacccctcctccccccaacactaagtccttgagagcaga 167
Query: 541 gacactactgccattctttgtatctctagcttttagctcattgcctggccctcagtggga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gacactactgccattctttgtatctctagcttttagctcattgcctggccctcagtggga 107
Query: 601 gctctgtatttgtctaatggatgcttgggctttgaagagaccccatcag 649
|||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 106 gctctgcatttgtctaatggatgcttgggctttgaagagaccgcatcag 58
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space: 663921
Effective search space used: 663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
