BAC Information

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BAC

Clone NameMSMg01-199J17
Chromosome15 (Build37)
Map Location 52,906,178 - 52,906,518
singlet/doubletsinglet
Overlap geneExt1
Upstream geneLOC100039720, LOC665219, Slc30a8, LOC100039748, Thrap6, LOC100039745
Downstream geneSamd12, EG665097, EG621631
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-199J17.T7 (MSMg01no199_j17.b1)MSMg01-199J17.TJ (MSMg01no199_j17.g1)
ACCAG386480AG386481
length729830
length of high quality
(start - end)
341 (62 - 402)48 (82 - 129)
definitionCHROMAT_FILE: MSMg01no199_j17.b1 PHD_FILE: MSMg01no199_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:13 2005CHROMAT_FILE: MSMg01no199_j17.g1 PHD_FILE: MSMg01no199_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:20:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAATCCGCGGAATTCCCTCT
GTTTACACCACTCTATCCTTCTGGACCTCAAGTCAGTCAGAAAACTTGGT
AGCCATTAAATTCTGATTAGGTCACCATTGTGAATCAGCTTCCAAGTATT
GCTGCAGGGTGGCCACTACTTACACCATCGTTCACTTCCTGGCCCCAGTC
TAATGTCCATCTCCATTTGGCTCACTCCTTTCTAACAGTTCTTCCTGCCT
TTGTCATCTTTTTTATTGACTGTTCTCATCACGACATCCAGAGTGGATAC
TGGGAACACAACCCTGAATTCTGCTCTGTTCAGGCCATGCACTGACCCAT
CCATTAGAGGCTCCCAGGCCTCTTGGACCTTCTCATCCACTGCACCATAG
TCACCCCCCCCCACCTTCTTTTCCATCTTCGTCCATTGTTTTACTCTGGG
TGTTTCTTCTTGCTATTCCCAATGCTATCTATAACATCCTTGGCTACCTT
TCTCTTGCTTTGAAGTTACTGCTCACTTCCCATCTGTATAACATACCATC
CTGACCACTCTCCAATCTGCCTCATTTCTGCTTCTCACGCTATTTGACTC
TTTTGCTTGTGTCTTCTTGCTGACCCTGATTTCCCTGATATATTTATTAT
AACTCTGAACAACAATTATTTCAACCCTGCCTCTGCTTCAGAAGTCTCAT
CTTCTCTCTACATTAATCTTCACCCCATA
AATCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACCGTCTAGTTGTTGGAT
ATGTTGGATGATGGGGGCTGGGGGTGNCCCCCCCCCCCCCCCCCCCCTCC
CGCCCCCCCTCCTCTCTTTTTTTTTTCCTTTCTCTTTTTTCTTTTTTTTC
TTTTCCTTTCCCCTTTCTCCTCTTCTCTCCTTTTTTTTTTTTTTTTGCCC
CCCTTCTCTTTTTTTCTTTCCTTTTTTTTTTTCTCTCCTGTCCTGTTTTG
TTCTTGCATGTTTTTCTGTCCCCCCNCTTTTTTTTTTTATTCCTTCCCCT
TTTTCCTTTCGGTCGCTTTTTATTTCCCCCCCCCCCTTTTTTTTTTTTTT
TTACTTTTATTTTTTTTTGTTTATCCCCCCCCCCCTCCCTATTTATTCTA
TACCCTATTTTTCTTTTTTTTCCTTTCCCACCCCCCCTCTGCTCCTGGGT
TATTTTGTACTTTCCAAACTTGACTATTTACCTACCCTTTTCCTTTCTCT
TTCTCCGCCCCCCCTTTTTTTTTCTTCTCTTTTTCCCACCACTATTTTTT
CCCCGCCCCTCTTTCCCCTTCTTTTGTTCACCCCTTCATTTCATTGTTTC
CAAAACCCTTTTTCTTCCCCCTTTTCCCCCCACTTATTCTTCTTTTCTTC
GTCCTTTTGTTTCCCCCCTTTTTTCCCCCTTTTTTTTTTTTTTACTTTCG
TCCCTTTATTCTCTCCTTATATCCGCCCTCCCATGTATCCTTTTGTGTTA
CCCATGTGCATTCTCTATCCTAATACTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no199_j17.b1 MSMg01no199_j17.b1 CHROMAT_FILE:
MSMg01no199_j17.b1 PHD_FILE: MSMg01no199_j17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:20:13 2005
         (341 letters)



>mm_chr15_52905978_52906718
          Length = 741

 Score =  605 bits (313), Expect = e-177
 Identities = 334/341 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctatccttctggacctcaagtcagtcagaaaacttggtagccattaaattctgattagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctatccttctggacctcaagtcagtcagaaaacttggtagccattaaattctgattagg 260

                                                                       
Query: 61  tcaccattgtgaatcagcttccaagtattgctgcagggtggccactacttacaccatcgt 120
           |||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 261 tcaccattctgaatcagcttccaagtattgctgcaaggtggccactactcacaccatcgt 320

                                                                       
Query: 121 tcacttcctggccccagtctaatgtccatctccatttggctcactcctttctaacagttc 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcactccctggccccagtctaatgtccatctccatttggctcactcctttctaacagttc 380

                                                                       
Query: 181 ttcctgcctttgtcatcttttttattgactgttctcatcacgacatccagagtggatact 240
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctgcctttgtcatctttctcattgactgttctcatcacgacatccagagtggatact 440

                                                                       
Query: 241 gggaacacaaccctgaattctgctctgttcaggccatgcactgacccatccattagaggc 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gggaacacaaccctgaagtctgctctgttcaggccatgcactgacccatccattagaggc 500

                                                    
Query: 301 tcccaggcctcttggaccttctcatccactgcaccatagtc 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccaggcctcttggaccttctcatccactgcaccatagtc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)