Query= MSMg01no202_m15.b1 MSMg01no202_m15.b1 CHROMAT_FILE:
MSMg01no202_m15.b1 PHD_FILE: MSMg01no202_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:44 2005
(626 letters)
>mm_chr15_15658046_15659076
Length = 1031
Score = 926 bits (479), Expect = 0.0
Identities = 593/635 (93%), Gaps = 13/635 (2%)
Strand = Plus / Minus
Query: 1 gaaaatttcatgaattacaaaag-aaaaaaatcaaacctaatgtcatgg-acccttgagc 58
||||||||||||||||||||||| ||||||||||||||||||||||||| || | |||||
Sbjct: 831 gaaaatttcatgaattacaaaagaaaaaaaatcaaacctaatgtcatggaactc-tgagc 773
Query: 59 tctttaaatcacaatcatattacataacttaagggaaaactgaaatattgttgaaatact 118
||||| ||||||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct: 772 tcttttaatcacaatcatattacataacttaaggggaaactgtaatattgctgaaatact 713
Query: 119 gaagacaaataaaagtaaaataaattataaagtattcttaaaattatggagaaatgagag 178
||| ||||||||||||||||||| |||||| || |||| ||||||||||||||||||||
Sbjct: 712 aaaggcaaataaaagtaaaataaaatataaaatagtcttcaaattatggagaaatgagag 653
Query: 179 catcatttaaatgtgaagtgtagggtaataagttaca-ttaaaaaaaactaaatagtctt 237
||||||||||| ||||| | ||||||||||||||||| ||||||||||||||||||||||
Sbjct: 652 catcatttaaacgtgaaatatagggtaataagttacatttaaaaaaaactaaatagtctt 593
Query: 238 tcacaatggttttaaaaagtcttaagagacaatagggct----cttttttgaaaatttat 293
|||||||| ||||| |||||||||||||||||||||| | |||||||| |||||||
Sbjct: 592 tcacaatgcttttagaaagtcttaagagacaatagggtttgagtttttttgataatttat 533
Query: 294 agtttctcactaacatctatactctcatcttattcaaaatatatcattatttaagaataa 353
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agtttctcagtaacacctatactctcatcttattcaaaatatatcattatttaagaataa 473
Query: 354 ttgatagtgaattactcagatcactc--tacatatttttagaaggatttgataaattctg 411
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 472 ttgatagtgaattactcagatcactctataca---ttttagaaggatttgataaattctg 416
Query: 412 aggtttatgtataaagtataacatgaataatttcaaaatatatcagcctaaaagttgatt 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 aggtttatgtataaagtataacatgaataatttcaaaatatatcagcctaaaagttgatt 356
Query: 472 atgtagaattttctaagattacaatactgtaaatatttaactactcaggtatcaacttta 531
||| | ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct: 355 atgcacaattttctaagattacaatactgtaaatatttaactaatcacgtatcaacttca 296
Query: 532 tcaaagatatcatgtattatgtgcattagcaaactttgcaacaaaatattctcaagggaa 591
| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 295 taaaagatatcatgcattatgtgcattagcaaactttgcaacaaaatattctcaagagaa 236
Query: 592 tagcacagtcaataattgaaaggattatttgttat 626
|||||||||||||||||||||||||||||||||||
Sbjct: 235 tagcacagtcaataattgaaaggattatttgttat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 6
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1031
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1021
Effective search space: 628936
Effective search space used: 628936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no202_m15.g1 MSMg01no202_m15.g1 CHROMAT_FILE:
MSMg01no202_m15.g1 PHD_FILE: MSMg01no202_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:23:44 2005
(279 letters)
>mm_chr15_15553516_15554194
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 275/279 (98%)
Strand = Plus / Plus
Query: 1 gaaacatgttgtaaatacctgtccatatatttggattcattttccttgcaaagtgcttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaacatgttgtaaatacctgtccatatatttggattcattttccttgcaaagtgcttac 260
Query: 61 gctttataattgtttcataaattcatgtaattcattgtctcccacgtatttggatgttca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctttataattgtttcataaattcatgtaattcattgtctcccacgtatttggatgttca 320
Query: 121 taaaactgcttgaaagtgtgaggataacaccagtttttaccatctccactgactgtattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaactgcttgaaagtgtgaggataacaccagtttttaccatctccactgactgtattc 380
Query: 181 ctagatacactcattattttattgaaaagaattcttaatttgaaaactcaatggttttta 240
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 ctagacacactcattattttattgaaaagaattcttaatttgaaaacttaatggttttta 440
Query: 241 attcgaatgaaaatgtgtgtttgtggaccatgtgcgtat 279
||| |||||||||||||||||||||||||||||| ||||
Sbjct: 441 atttgaatgaaaatgtgtgtttgtggaccatgtgtgtat 479
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
