BAC Information

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BAC

Clone NameMSMg01-203E08
Chromosome15 (Build37)
Map Location 70,841,635 - 70,841,946
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383050
Downstream geneLOC383051, 1700010C24Rik, LOC100040847, Col22a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203E08.T7 (MSMg01no203_e08.b1)MSMg01-203E08.TJ (MSMg01no203_e08.g1)
ACCAG388106AG388107
length727727
length of high quality
(start - end)
317 (45 - 361)445 (77 - 521)
definitionCHROMAT_FILE: MSMg01no203_e08.b1 PHD_FILE: MSMg01no203_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:22 2005CHROMAT_FILE: MSMg01no203_e08.g1 PHD_FILE: MSMg01no203_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTGTTGGTTGCATCAATAGTCATATCAGTTGAAGGAACGTGGCT
CTAGGAAAATAAGTTTTGTTGCCCAATATATTCCACAAATCATCCCTTCA
TTCTCATAAAGTTCTACCCAAAACTGCACAGAGACTATCTTAGTAAAGTA
ATTTTAGCAACTAAACAAATGGGTTTATTTTAACTAGAAAGATGCTACTG
GATTTATCTTTTATATAATGGAAATTTTTGGTAGCCATTGAATGTCGTTC
TTTTATAAAAAGAATAAAGAAAACCTTCAAACTAGATAAAACTCCAGGGA
TTAAGGCAGACAGATGGCGGCCAGCTGCGCTTAGAAGGTTCTGAACAACT
TTTTGTATTTTCCNCCCCCCACTTCAGCAAAGCTTCATGAACCAAAGCTT
CTAAGGAATTAGAGAATGTGATGAATAACTGCATCAGTCTCTCATACATT
GGTGCACTTCGGGGCATTCCAGCAAAAACAGGGAAAATATGCTGTGATTC
TCATTGAATGTTTGCTGAAAGAAGCAGGAGATGTGAGGTCTGGAGAATGA
CTGCTTAACTCCTGACAGAAGGATACATGATTCCCAAGGTTTCTCTCAGA
AATGTTCCACTCTGCCAGCGCGTCTCCATTATTACCTTATGATTAATACA
CGCTACTCCCAAATCTATTTATGCTTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTCAGACAACTGTATTCTTCTAC
GGCAAGGCTTTATTGCTTCATCTGACGGAAGACCCCGAACAAGGAAAATG
GTGCTGCTTATATGCCCCTCCGTGTGACGTGTCAGCTCCTGATTAGCTGC
TCACTCATTACCCCACTACTACGCCCCGGGATGGGCAGTGACTTGGCACG
AATTTACTCTTGCACCTGCGCACATTACTTGTTTACCAGTTAGGCACAGC
GGAGGCCAGCACCATCTTGTAATGGAGATTGCTCACAGCTCTCCACATAT
ACACACATAATTATTAGTAAAAACATATCTATTAATTTATGAAATTATTA
ATCAACATATTAATATCACCCATATTATACTTACATTACCATAATATATA
TATACATATATGTGTGTATGTATATATATGATATATATATATATACATAT
ATATGATTATTTAATAATCAGCGACCTAAGGAAATATTATTACGAACAGG
TAGGAGGAATATGACCTCCATTGATCGATGATGAGGATTACATTACTGTT
TCTGACGTATATTATGCTCCAGGCTATTCCCCTAAAAGCCCAAGGACTTC
CTGTAAGGTACCATCCTGACTGCTCACTACAATACTTTTTCGCCCTCTTG
ACCGCCCGATAGATTCTCTTTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_e08.b1 MSMg01no203_e08.b1 CHROMAT_FILE:
MSMg01no203_e08.b1 PHD_FILE: MSMg01no203_e08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:22 2005
         (317 letters)



>mm_chr15_70841430_70842146
          Length = 717

 Score =  565 bits (292), Expect = e-165
 Identities = 307/312 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   aattcttgtgttggttgcatcaatagtcatatcagttgaaggaacgtggctctaggaaaa 65
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 206 aattcttgtgttggttgcatcaatagtcatatcagttgaagaaacgtggctctaggaaaa 265

                                                                       
Query: 66  taagttttgttgcccaatatattccacaaatcatcccttcattctcataaagttctaccc 125
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 taagttttgttgtccaatatattccacaaatcatcccttcattctcataaagttctaccc 325

                                                                       
Query: 126 aaaactgcacagagactatcttagtaaagtaattttagcaactaaacaaatgggtttatt 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 aaaactgcacagagactatcttagtaaagtaattttagcaactaaacaaatgggtttatt 385

                                                                       
Query: 186 ttaactagaaagatgctactggatttatcttttatataatggaaatttttggtagccatt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ttaactagaaagatgctactggatttatcttttatataatggaaatttttggtagccatt 445

                                                                       
Query: 246 gaatgtcgttcttttataaaaagaataaagaaaaccttcaaactagataaaactccaggg 305
           ||||||| |||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct: 446 gaatgtctttcttttataaaaagaataaagaaaaccctcaagctagataaaactccaggg 505

                       
Query: 306 attaaggcagac 317
           ||||||||||||
Sbjct: 506 attaaggcagac 517


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)