BAC Information

Click to search

BAC

Clone NameMSMg01-203H22
Chromosome15 (Build37)
Map Location 93,131,125 - 93,131,466
singlet/doubletsinglet
Overlap geneYaf2
Upstream geneCntn1, Pdzrn4, LOC100042552, LOC100043283, Glt8d3
Downstream geneZcrb1, Pphln1, LOC627623, Prickle1, Zfp42-ps1, LOC100042627, LOC100042631, D630010B17Rik, Adamts20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203H22.T7 (MSMg01no203_h22.b1)MSMg01-203H22.TJ (MSMg01no203_h22.g1)
ACCAG388239AG388240
length730744
length of high quality
(start - end)		---343 (75 - 417)
definitionCHROMAT_FILE: MSMg01no203_h22.b1 PHD_FILE: MSMg01no203_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:40 2005CHROMAT_FILE: MSMg01no203_h22.g1 PHD_FILE: MSMg01no203_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
CGTCCTAGTATGATGTCTTATGCAGGATTTCTATTCCTGTTCTACCATGA
TGACCCCGAAACAAGTTGTGGCCCAAAGGGTCTATTCAGCTTACACTTCC
ATGTTGCTATTCCTCACCAATGAATCTCAAGACTGGAACTCAAGCATGAC
AGGAAGAATTATGTGATGCACAGACCATGGTATCAGAATACTGACTGGCT
TGCCTCTCCTGGCTTGATCAGTTTGGTTTCTTACATACCCTGATCTACCC
TCCCTACGATGAAAACACTCGTCATGAGTCCTTCGTCCTTGATCACTACT
TGAGAACATGTTTTTTATCCCCACCCCAAGAATCTTTATCCTCCACTGAG
GATACTTTCTCTGCCCACCCCCCCCTTCTGTATCGAGTTGACGAAGCTTC
AACCAATAGCTATGATCCGCGATGCTGATTTACTACCTCCCTGCGTCGAG
ATGATATAGTTAATCCTTGATCATGAGATGAAGAAAGCAATGAAGCCCTA
GAGTCCTGCGACTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGATTTCTAAGAGACATTACCCAC
AAAAATCAAGGTTGACAGCTCCTGAGGAGCAGTGCCTGAGTTGACCTCCA
TCTTCCATGTGCACACACATGCATCCATGTGCACACACAGGCACATGCAT
CCACAAGCATCCACATGTCCATATGCACACACATGCACATGCATCCACAT
GTCCATATGCACCTGGACACACCTGCGTATGTGCAAGACCAGACAGGTTT
TCTTAGCTAGAATTTGAAGTTACTCTAAGTAGAATTAGGGCTACAAGAAA
GAAAGTAACCTGGGTATAAATGATGCTCATGTTTATCAGGGATCAGTTGG
CATAGCTAGTCAATCACACCCCCCCACCTCAATGTGGTGTACATAGCCAG
ATTCCAGTCCTCAGAACGCTGGGCTGGGAAAGGTTGTGAGTTCTAAGGCA
GCCTAAATCATAGAAGAATATCCTGTCTCCCAAAAGGAAAGGAGGCAAGG
GGAATGGATTATTTTTGGTAGGAAAATATGAATCTAAAAAAATGACCATA
CCAGACTTTGAAACCTTGTAACTTACTATGCCCCCATGTCTCTTGAGAGA
TACTTTCCAAAGAATTTCCTCACCCTGACTAATTTTATATAACCCCTCTC
CATTTTTATAAATCCTAACCACCTAATTTTTCCCTATTATTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_h22.g1 MSMg01no203_h22.g1 CHROMAT_FILE:
MSMg01no203_h22.g1 PHD_FILE: MSMg01no203_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:40 2005
         (343 letters)



>mm_chr15_93130727_93131469
          Length = 743

 Score =  661 bits (342), Expect = 0.0
 Identities = 342/342 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggatttctaagagacattacccacaaaaatcaaggttgacagctcctgaggagcagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 caggatttctaagagacattacccacaaaaatcaaggttgacagctcctgaggagcagtg 681

                                                                       
Query: 61  cctgagttgacctccatcttccatgtgcacacacatgcatccatgtgcacacacaggcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cctgagttgacctccatcttccatgtgcacacacatgcatccatgtgcacacacaggcac 621

                                                                       
Query: 121 atgcatccacaagcatccacatgtccatatgcacacacatgcacatgcatccacatgtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atgcatccacaagcatccacatgtccatatgcacacacatgcacatgcatccacatgtcc 561

                                                                       
Query: 181 atatgcacctggacacacctgcgtatgtgcaagaccagacaggttttcttagctagaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atatgcacctggacacacctgcgtatgtgcaagaccagacaggttttcttagctagaatt 501

                                                                       
Query: 241 tgaagttactctaagtagaattagggctacaagaaagaaagtaacctgggtataaatgat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgaagttactctaagtagaattagggctacaagaaagaaagtaacctgggtataaatgat 441

                                                     
Query: 301 gctcatgtttatcagggatcagttggcatagctagtcaatca 342
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gctcatgtttatcagggatcagttggcatagctagtcaatca 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |