BAC Information

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BAC

Clone NameMSMg01-203J12
Chromosome15 (Build37)
Map Location 78,843,588 - 78,843,880
singlet/doubletsinglet
Overlap genenone
Upstream geneCacng2, Rabl4, Pvalb, Ncf4, Csf2rb2, Csf2rb1, 1700061J05Rik, Tst, Mpst, Kctd17, Tmprss6, Il2rb, C1qtnf6, Sstr3, EG626952, Rac2, Pscd4, Lrrc62, Mfng, Card10, LOC641104, LOC100041601, Cdc42ep1, Lgals2, Gga1, Sh3bp1, Pdxp, Lgals1, Nol12, Triobp
Downstream geneH1f0, Gcat, Galr3, LOC100042603, Ankrd54, Eif3s6ip, 1700088E04Rik, Polr2f, Sox10, LOC100041655, Pick1, Slc16a8, Baiap2l2, Pla2g6, Maff, 4732495E13Rik, Csnk1e, LOC675798, LOC100041676, Kcnj4, Kdelr3, Ddx17, Dmc1, 4933432B09Rik, Pgea1, Tomm22, Josd1, Gtpbp1, Unc84b, Dnalc4, Npcd, Nptxr, Cbx6, LOC100042748, Apobec3, Cbx7, Pdgfb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-203J12.T7 (MSMg01no203_j12.b1)MSMg01-203J12.TJ (MSMg01no203_j12.g1)
ACCAG388300AG388301
length903784
length of high quality
(start - end)		---293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no203_j12.b1 PHD_FILE: MSMg01no203_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:48 2005CHROMAT_FILE: MSMg01no203_j12.g1 PHD_FILE: MSMg01no203_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:24:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTGGCGCGAAGNNNNNNNNCNNNGGNCCNCNCAAANNNCGATAT
AATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCAGGATCCGCGGAA
TTCTGTGGGTGGTGGCCAGGGAAGGCAAATGGGGGTGTGGGGGAAAGAAA
AGACAAGAGAAGCATGTATTCCCCCAAAAAAAGTGTGATGTTGTTNTAAG
TTTGGATTGAAAGGAGAGAGTTTATATAAATAATTAAGAATAAATTTATA
AAAAATGTTTAAATAGAAATTTAATTATTTTAATAAATTTTTATTAATAT
TAGAGGATATTTTTATATACAAANTATGTTTTAATTTTTTTATAAAAAAG
AAAAAATTAAATATAAAAAAATAATTTTTTTTTTTTATTAAAAAAAAAAA
AATATATAGAAATAAATAGATTTTTAATATTTTCAACACCCCCCCCCAAT
AATTGAAATTATGTAATATTTTTTTGTTTGTGTCCCCCATCTCCCCCAAA
AAAAAAAAAAATTATGGAATATGTTAAGGTGATTTAAATTTTATAATAAT
TTAATATAGATTGAATATATAATATTAATAAAATTTTAATATAATTATAA
AAAGTTATATATAACATTATAAAATAGGAAAAAATGTTTATTTGTTTAAA
ATATATGTTAAATAATATTATCAATGTTTAATTATTATAATAATTTCGTT
AAATATATATGTTTCATGGTTAAAATAATAATAAAAATATATTTTAAATA
ATTAACAGAAATAATTTTTAAAAAATTATTAATTTAATTTTATATTTAAA
TTAAATTTAATAGGAAGATGTTTTTTATATTTTAATAATAAAATTTAGTA
TTATTATAGATAATATATATAGAATGGTAAGATTTGTGTAGATGTGTAGT
ATT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTCTCAGATGTAGAAGTCCCAGACAG
AGTTAGATGCCTGCTAGGATTCCCCCAGTCCCTCCACGGGGCGGGATCTT
TCATGAGCTTCTTCCAGACATGAAAGCCCGGGAGCTAGATTTACTCACTT
TGCTAACTACCCAGCACCTGATATCTCAGCTGGGTGAGTATTTGTTGATG
GACCGCCTGGAAATGAATGGTCAAGCCAAGCACCCTATAAACAGGTCACA
GCCCCAGCCTTGCGCCAAGCAGCATGAGGTGGTTGTCCCCCACACCCTGC
CCCACCCCCAGGACGTTTTGAAGCTAACCCGCACGGCTGCAGGCTAATAG
CAGTTTCTGAAGACCAACCTCCTCCCCTGAAAAAGAGGATCATTTTCAGC
CATCCTGGCGTCCCATCTGGATGCCACAAGGTCTTGATGCACTCTGATGT
TCTGTACAGCAGTAGTCCGTTTAACGAATCACCTTATTTTCTCTTGTCCC
TTCCCCCTTTAATTTCCTCCTTTTATTCTTTCCATCCTCCCCTTCGACCT
CACCCCTTCTTTTATCAATTGTTTTCATTTCATTATGTGTTATCTCTTAT
TTCCTCTTTTATTTTCCTCTCTCCATCTATATTCCCCCTTTTTTTTCGCC
CACCTAATTTAGATATTTTTTATTCCCCTTCTTATAATATCATCTCATTC
ATCAGCGACTTTTTTTACTCCTCATCTGTATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no203_j12.g1 MSMg01no203_j12.g1 CHROMAT_FILE:
MSMg01no203_j12.g1 PHD_FILE: MSMg01no203_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:24:48 2005
         (293 letters)



>mm_chr15_78843388_78844081
          Length = 694

 Score =  514 bits (266), Expect = e-150
 Identities = 287/294 (97%), Gaps = 3/294 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctctcagatgtagaagtcccagacagagttagatgcctgctaggattcccc-cagtccc 59
           ||||||||||||||| ||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 201 cctctcagatgtagacgtcccagacagagttagatgcctgctaggat-ccccacagtccc 259

                                                                       
Query: 60  tccacggggcgggatctttc-atgagcttcttccagacatgaaagcccgggagctagatt 118
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tccacggggcgggatctttccatgagcttcttccagacatgaaagcccgggagctagatt 319

                                                                       
Query: 119 tactcactttgctaactacccagcacctgatatctcagctgggtgagtatttgttgatgg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tactcactttgctaactacccagcacctgatatctcagctgggtgagtatttgttgatgg 379

                                                                       
Query: 179 accgcctggaaatgaatggtcaagccaagcaccctataaacaggtcacagccccagcctt 238
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 380 accgcctggaaatgaacggtcaagccaagcaccctataaacaggtcacagccccagcctc 439

                                                                 
Query: 239 gcgccaagcagcatgaggtggttgtcccccacaccctgccccacccccaggacg 292
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcgccaagcagcaagaggtggttgtcccccacaccctgccccacccccaggacg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 694
Length adjustment: 9
Effective length of query: 284
Effective length of database: 685
Effective search space:   194540
Effective search space used:   194540
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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