Query= MSMg01no204_j01.b1 MSMg01no204_j01.b1 CHROMAT_FILE:
MSMg01no204_j01.b1 PHD_FILE: MSMg01no204_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:09 2005
(249 letters)
>mm_chr15_59842024_59842673
Length = 650
Score = 445 bits (230), Expect = e-129
Identities = 242/246 (98%), Gaps = 1/246 (0%)
Strand = Plus / Minus
Query: 4 ggaattctctgactctgtgcatggttaaatgtgcatctgaaaattgtgattatctctgaa 63
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 449 ggaattatctgactctgtgcatggttaaatgtgcatctgaaaattgtgattatctctgga 390
Query: 64 gaaacacaacagaagcaatcaaacatgtatgtacctcttatagggtaaaacagagatcct 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gaaacacaacagaagcaatcaaacatgtatgtacctcttatagggtaaaacagagatcct 330
Query: 124 gaggtgtctgacaaggaaaatagaaatggcctctttgattctgcag-attgttgtttttt 182
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 329 gaggtgtctgacaaggaaaatagaaatggcctctttgattctgcagaattgttgtttttt 270
Query: 183 aaatcttaattattgtctccaaaaattagaattagtctagggagatggaatgggaaggtg 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 taatcttaattattgtctccaaaaattagaattagtctagggagatggaatgggaaggtg 210
Query: 243 ttgttg 248
||||||
Sbjct: 209 ttgttg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space: 153840
Effective search space used: 153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no204_j01.g1 MSMg01no204_j01.g1 CHROMAT_FILE:
MSMg01no204_j01.g1 PHD_FILE: MSMg01no204_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:09 2005
(631 letters)
>mm_chr15_59711763_59712792
Length = 1030
Score = 1158 bits (599), Expect = 0.0
Identities = 621/631 (98%), Gaps = 6/631 (0%)
Strand = Plus / Plus
Query: 1 attttctcctttgaattcggtctaggaccctaagcgaggggatggtgctgctcaaactta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 attttctcctttgaattcggtctaggaccctaagcgaggggatggtgctgctcaaactta 265
Query: 61 tggtgggccttttcatgctcactaaaactcttctggaaacagtcctcaaaggtacatcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 tggtgggccttttcatgctcactaaaactcttctggaaacagtcctcaaaggtacatcca 325
Query: 121 gagatgtgtttccatggtaattctaaatgcattcgagttgacgatgagatgaagattaac 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 326 gagatgtgtttccatggtaattctaaatgcattcgagttgacgatga-----agattaac 380
Query: 181 taccacagggtccatatggtagaaaaaccatatttgggacatgctgttcttgtgatagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taccacagggtccatatggtagaaaaaccatatttgggacatgctgttcttgtgatagag 440
Query: 241 gagaaaggacaaaaaatgtgtatatacccacaaaatggtcctagaaattctttgggaggt 300
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gagaaagaacaaaaa-tgtgtatatacccacaaaatggtcctagaaattctttgggaggt 499
Query: 301 ggcattcatttctggcatttgcattttactgaggaaagtgaaacacacacctgatgaagt 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 500 ggcattcatttctggcatttgcattttactgaggaaagtgaaacacagacctgatgaagt 559
Query: 361 gacagatgtcactgtaacccatacaacagtgggtggggctatctctaatcttacgtcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gacagatgtcactgtaacccatacaacagtgggtggggctatctctaatcttacgtcagg 619
Query: 421 gcttgtgaatacttaggtgtgctgctgtgatatggcattgttttttgttattcacggggt 480
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 gcttgtgaatacttacgtgtgctgctgtgatacggcattgttttttgttattcacggggt 679
Query: 481 ctatatttgtgaattgatcttctagctgtaatttacatgcaatcctgattccacacacgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctatatttgtgaattgatcttctagctgtaatttacatgcaatcctgattccacacacgt 739
Query: 541 ttatgtatgtgcacagaacagatttcctagagtgcccatctccatggagtttgagcaaag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttatgtatgtgcacagaacagatttcctagagtgcccatctccatggagtttgagcaaag 799
Query: 601 ctctgtcttcctgtagtttcagagatgacca 631
|||||||||||||||||||||||||||||||
Sbjct: 800 ctctgtcttcctgtagtttcagagatgacca 830
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space: 633420
Effective search space used: 633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
