Query= MSMg01no205_d15.b1 MSMg01no205_d15.b1 CHROMAT_FILE:
MSMg01no205_d15.b1 PHD_FILE: MSMg01no205_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:03 2005
(670 letters)
>mm_chr15_56492717_56493786
Length = 1070
Score = 1210 bits (626), Expect = 0.0
Identities = 656/666 (98%)
Strand = Plus / Plus
Query: 5 gaattcttacctaccagtaattcttcgggctactccttatcttgtctatgaaggaaatga 64
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttacccagtagtaattcttcgggctactccttatcttgtctatgaaggaaatga 264
Query: 65 ctcaagcatgacgagggaagatgggaagtagctacagcatcattggatttgccccattgc 124
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaagcatgaggaggggagatgggaagtagctacagcatcattggatttgccccattgc 324
Query: 125 cagataaagtcatccccgtggagacacttgcttaaacaagcctcatccagactgggcttc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagataaagtcatccccgtggagacacttgcttaaacaagcctcatccagactgggcttc 384
Query: 185 tgtccatatggtaagatatcatctctatatgcccagaaggaattctgaacaatttggaaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtccatatggtaagatatcatctctatatgcccagaaggaattctgaacaatttggaaa 444
Query: 245 gtggccacgtgctgggatcacagcaacttcagcagcctcagtcagtcatcattcgggaag 304
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 445 gtggccacgtgctgggatcacagcaacttcagcagcctcagtcagtcatctttcgggaag 504
Query: 305 gtcactggaagttctcactttcctttgtgcttcttgatttctgcgtatcttttgccaaaa 364
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtcactggaagttctcagtttcctttgtgcttcttgatttctgcgtatcttttgccaaaa 564
Query: 365 ctccacctacggaaagttacagatcacaacccaatacctagatccctggttatatggagc 424
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctctacttagggaaagttacagatcacaacccaatacctagatccctggttatatggagc 624
Query: 425 aagacttctttcaactggggccagatgtttgaaaagtagtaacttcagtatatacaaaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagacttctttcaactggggccagatgtttgaaaagtagtaacttcagtatatacaaaag 684
Query: 485 tagtttttccctccctaagactataagacccatatttaggcaggatattgtctagataac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tagtttttccctccctaagactataagacccatatttaggcaggatattgtctagataac 744
Query: 545 aaagaccgattgggagcttagatccacattcccctgggattgataaaaccattctaaagg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaagaccgattgggagcttagatccacattcccctgggattgataaaaccattctaaagg 804
Query: 605 gacaaagctctagtttcagagtctgttcaaaatcaaaccacatatttttaaagaatttgt 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gacaaagctctagtttcagagtctgttcaaaatcaaaccacatatttttaaagaatttgt 864
Query: 665 ttgggt 670
||||||
Sbjct: 865 ttgggt 870
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space: 699600
Effective search space used: 699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no205_d15.g1 MSMg01no205_d15.g1 CHROMAT_FILE:
MSMg01no205_d15.g1 PHD_FILE: MSMg01no205_d15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:03 2005
(279 letters)
>mm_chr15_56648959_56649637
Length = 679
Score = 487 bits (252), Expect = e-142
Identities = 273/280 (97%), Gaps = 2/280 (0%)
Strand = Plus / Minus
Query: 1 cagtgtccactgaagtacgggtataaaatggcacctgtaagattgtgaaggatgtattaa 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 479 cagtgtccactgaagtacgggtataaaatggcacctttaagattgtgaaggatgtattaa 420
Query: 61 attttggtttgcaaacaaatccttgctattcacaatttaaaaacagtaaagtacagaatt 120
||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 419 attttggtttgcaaacaaatctttgctattcacaattttaaaacagtaaagtacagaatt 360
Query: 121 att-tgggttttagactcatccattcagtctagcttggcagagaatgctgatggagcagt 179
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 -ttctgggttttagactcatccattcagtctagcttggcagagaatgctgatggagcagt 301
Query: 180 taagtgattttgcaaagtcatatattagtggttgacttaacttgcagacttctttgcata 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 taagtgattttgcaaagtcatatattagtggttgacttaacttgcagacttctttgcata 241
Query: 240 gtcctattacagtcatcataattacagtaattggcttaat 279
||||||||||||||||| |||||||||||||||| |||||
Sbjct: 240 gtcctattacagtcatcgtaattacagtaattggattaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
