BAC Information

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BAC

Clone NameMSMg01-205O16
Chromosome15 (Build37)
Map Location 53,305,019 - 53,305,185
singlet/doubletsinglet
Overlap geneSamd12
Upstream geneLOC100039748, Thrap6, LOC100039745, Ext1
Downstream geneEG665097, EG621631, Tnfrsf11b, LOC665280, EG383032, Colec10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205O16.T7 (MSMg01no205_o16.b1)MSMg01-205O16.TJ (MSMg01no205_o16.g1)
ACCAG389725AG389726
length772793
length of high quality
(start - end)
167 (69 - 235)323 (77 - 399)
definitionCHROMAT_FILE: MSMg01no205_o16.b1 PHD_FILE: MSMg01no205_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:55 2005CHROMAT_FILE: MSMg01no205_o16.g1 PHD_FILE: MSMg01no205_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:27:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTACAAGTTTCATAGGATGATACCAGTGTCACGAAGACATGGACCA
CTCAGTGTTACTAATACATGGACCACACTCTAGCAAGGTCTGAGGGCTCC
CAACCTCCTACCGTAGCACTCACTGGCAGCTTGAGCTTTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTATATATAACCTCT
TTTTTCTCTTCCCTTTTTCCCCCCTCTTTTCCCTTTTCCTCTCTCTTCCC
CCCTCCTTTTTCCCTTTTTTTTTTTTCTCTCCCCTCCTCTTATCTCCTTT
TTCCCTTCCTTTTTTTTTCTCCCCCCCCCCTCCTTCCTTTACTTTCACAT
TAATTTTTTTTATTTCCCCCCCCCTCTTTAAAAAAAAATAAAATATTTTA
TACTCTTTCTTTATCTTCTTCTATACCCACCCCTTATTCCCCTTATCCCC
CTTTCTTACTTTTTATCCACTTTCTATATATATTTTTCTCTTTCTCCCCT
TTCTCTCTTCCGTCTTCTTTTTCCTCATCTTTTTACTCCCATTTTCCCCT
CTTTCCCTCTTTCCCCTTTTCCCTTCCCCCCCTCTCCTTTCTCCCCTACA
CCTACTATTTAACCCAAATCTTCCTATTTTTCTCTTCAATTAATATTTCA
ATTCCTCCTTTTTTTCCCTCTTTCCTCCCCTCACTTCCACCTTTCTTTTA
TTACCCTCCCTCCCCCACTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCACTATGCCTCAAGATCTC
CGTGCCTAGATCCAGGTCAGAAACTTGTATCTCCCAGCCTCCAGATTAGG
ATCACTGGTGAACCTTCCAAATTTGGATTGTAGTTCATTCCAGATATAGT
CAACTGGACAACCAGGAATAGCCACTACACCCAGCAACCACAGCGGGCCT
CACAACCATCTCTAATATGATCTCATGCCCTCTTCTGGCATGCAGGTATG
CATGTAGATAGAGTACTCATATACATCAGGTAGATGGGTGGATAGATAGA
TAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATANCNT
CCCCNTTNNNNCCCCCCCCCTCTTTCAAATAAAATTTATATTCCTATCTC
TCTCTCTCATATACCATCCTTCCCATCTCCCCTATCTCTTTTTCTTCTCC
ATCTTCTTATCCTACCTCCAATCCCACCTTCTCTCTCCCCTCCCCCTCCC
CTCCCCTCCTTCTATCTTTTCCCTTCCACTCTTTTCCCCTTTCCCTCCCT
TTCATTCCTTTTTCTTTTTTCCTCCTCTTTTTCCCTCCCCTTTACCCCCC
CCCCTCCACTCTTATCTTCCCCCCTCTCTCACCCTTTTTCTCCCTTCCCC
ATTTTCCCCTTTCTTCTTTATATTATCCCCACCCCTCTTTTTTTTCCCCT
CTTCTTTTTCTTTCCCCTCCTCCACTTTTCTCCACCTTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_o16.b1 MSMg01no205_o16.b1 CHROMAT_FILE:
MSMg01no205_o16.b1 PHD_FILE: MSMg01no205_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:27:55 2005
         (167 letters)



>mm_chr15_53304819_53305385
          Length = 567

 Score =  323 bits (167), Expect = 3e-93
 Identities = 167/167 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggatgataccagtgtcacgaagacatggaccactcagtgttactaatacatggaccacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggatgataccagtgtcacgaagacatggaccactcagtgttactaatacatggaccacac 260

                                                                       
Query: 61  tctagcaaggtctgagggctcccaacctcctaccgtagcactcactggcagcttgagctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctagcaaggtctgagggctcccaacctcctaccgtagcactcactggcagcttgagctt 320

                                                          
Query: 121 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 167
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 367


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 167
Length of database: 567
Length adjustment: 8
Effective length of query: 159
Effective length of database: 559
Effective search space:    88881
Effective search space used:    88881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)